STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LTBLymphotoxin beta; Belongs to the tumor necrosis factor family. (312 aa)    
Predicted Functional Partners:
LTA
Tumor necrosis factor ligand 1E; Belongs to the tumor necrosis factor family.
   
 0.998
LTBR
Lymphotoxin beta receptor.
   
 0.926
CXCL13
C-X-C motif chemokine.
   
  
 0.693
TNFSF13B
TNF superfamily member 13b; Belongs to the tumor necrosis factor family.
   
 
 0.684
LY6G5B
Lymphocyte antigen 6 family member G5B.
      
 0.666
CCR7
C-C motif chemokine receptor 7; Belongs to the G-protein coupled receptor 1 family.
   
 
 0.626
MAP3K14
Mitogen-activated protein kinase kinase kinase 14.
   
 
 0.614
ARHGAP44
Rho GTPase activating protein 44.
   
  
 0.611
PTPRCAP
Protein tyrosine phosphatase receptor type C associated protein.
   
  
 0.593
STX2
Syntaxin 2; Belongs to the syntaxin family.
      
 0.577
Your Current Organism:
Felis catus
NCBI taxonomy Id: 9685
Other names: F. catus, Felis domesticus, Felis silvestris catus, Korat cats, cat, cats, domestic cat
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