STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RTL4Retrotransposon Gag like 4. (295 aa)    
Predicted Functional Partners:
SLCO6A1
Solute carrier organic anion transporter family member.
   
  
 0.750
FANCM
FA complementation group M.
    
 0.701
LRRK1
Leucine rich repeat kinase 1.
    
 0.694
RBP7
Retinol binding protein 7; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family.
      
 0.605
UBE4B
Ubiquitination factor E4B.
      
 0.549
ALDH1A3
Aldehyde dehydrogenase 1 family member A3; Belongs to the aldehyde dehydrogenase family.
     
 0.504
LHFPL1
LHFPL tetraspan subfamily member 1.
   
  
 0.459
LHFPL6
LHFPL tetraspan subfamily member 6.
   
  
 0.459
TRPC5
Transient receptor potential cation channel subfamily C member 5; Belongs to the transient receptor (TC 1.A.4) family.
      
 0.455
RTL1
Uncharacterized protein.
      
 0.451
Your Current Organism:
Felis catus
NCBI taxonomy Id: 9685
Other names: F. catus, Felis domesticus, Felis silvestris catus, Korat cats, cat, cats, domestic cat
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