STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL13A1Collagen type XIII alpha 1 chain. (728 aa)    
Predicted Functional Partners:
RAB3IL1
RAB3A interacting protein like 1.
    
 
 0.728
COL4A6
Collagen type IV alpha 6 chain.
  
  
0.660
RPH3A
Rabphilin 3A.
      
 0.653
ENSFCAP00000046833
Uncharacterized protein.
 
  
 0.640
PLOD3
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3.
   
 0.589
COL16A1
Collagen type XVI alpha 1 chain.
  
  
0.586
PLOD2
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2.
   
 0.586
ITGA1
Integrin subunit alpha 1; Belongs to the integrin alpha chain family.
    
 0.575
PLOD1
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1.
   
 0.568
SCARA5
Scavenger receptor class A member 5; Ferritin receptor that mediates non-transferrin-dependent delivery of iron. Mediates cellular uptake of ferritin-bound iron by stimulating ferritin endocytosis from the cell surface with consequent iron delivery within the cell. Delivery of iron to cells by ferritin is required for the development of specific cell types, suggesting the existence of cell type-specific mechanisms of iron traffic in organogenesis, which alternatively utilize transferrin or non- transferrin iron delivery pathways. Ferritin mediates iron uptake in capsule cells of the de [...]
  
 
0.543
Your Current Organism:
Felis catus
NCBI taxonomy Id: 9685
Other names: F. catus, Felis domesticus, Felis silvestris catus, Korat cats, cat, cats, domestic cat
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