ENSFCAP00000058404 protein (Felis catus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSFCAP00000058404

Uncharacterized protein. (106 aa)

Predicted Functional Partners:

POLR2J

0.985

POLR2E

0.981

POLR2H

0.981

POLR2F

0.980

POLR2B

0.979

POLR2I

0.976

POLR3K

0.976

POLR1C

0.975

POLR2D

0.974

TWISTNB

0.973

Your Current Organism:

Felis catus

NCBI taxonomy Id: 9685
Other names: F. catus, Felis domesticus, Felis silvestris catus, Korat cats, cat, cats, domestic cat

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSFCAP00000058404	POLR1C	ENSFCAP00000058404	ENSFCAP00000009027	Uncharacterized protein.	RNA polymerase I and III subunit C.	0.975
ENSFCAP00000058404	POLR2B	ENSFCAP00000058404	ENSFCAP00000049513	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.979
ENSFCAP00000058404	POLR2D	ENSFCAP00000058404	ENSFCAP00000018103	Uncharacterized protein.	RNA polymerase II subunit D.	0.974
ENSFCAP00000058404	POLR2E	ENSFCAP00000058404	ENSFCAP00000006785	Uncharacterized protein.	RNA polymerase II subunit E.	0.981
ENSFCAP00000058404	POLR2F	ENSFCAP00000058404	ENSFCAP00000047444	Uncharacterized protein.	RNA polymerase II subunit F.	0.980
ENSFCAP00000058404	POLR2H	ENSFCAP00000058404	ENSFCAP00000007221	Uncharacterized protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.981
ENSFCAP00000058404	POLR2I	ENSFCAP00000058404	ENSFCAP00000022952	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.976
ENSFCAP00000058404	POLR2J	ENSFCAP00000058404	ENSFCAP00000027600	Uncharacterized protein.	RNA polymerase II subunit J.	0.985
ENSFCAP00000058404	POLR3K	ENSFCAP00000058404	ENSFCAP00000027402	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.976
ENSFCAP00000058404	TWISTNB	ENSFCAP00000058404	ENSFCAP00000021875	Uncharacterized protein.	TWIST neighbor.	0.973
POLR1C	ENSFCAP00000058404	ENSFCAP00000009027	ENSFCAP00000058404	RNA polymerase I and III subunit C.	Uncharacterized protein.	0.975
POLR1C	POLR2B	ENSFCAP00000009027	ENSFCAP00000049513	RNA polymerase I and III subunit C.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.944
POLR1C	POLR2D	ENSFCAP00000009027	ENSFCAP00000018103	RNA polymerase I and III subunit C.	RNA polymerase II subunit D.	0.967
POLR1C	POLR2E	ENSFCAP00000009027	ENSFCAP00000006785	RNA polymerase I and III subunit C.	RNA polymerase II subunit E.	0.999
POLR1C	POLR2F	ENSFCAP00000009027	ENSFCAP00000047444	RNA polymerase I and III subunit C.	RNA polymerase II subunit F.	0.999
POLR1C	POLR2H	ENSFCAP00000009027	ENSFCAP00000007221	RNA polymerase I and III subunit C.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.999
POLR1C	POLR2I	ENSFCAP00000009027	ENSFCAP00000022952	RNA polymerase I and III subunit C.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.802
POLR1C	POLR2J	ENSFCAP00000009027	ENSFCAP00000027600	RNA polymerase I and III subunit C.	RNA polymerase II subunit J.	0.900
POLR1C	POLR3K	ENSFCAP00000009027	ENSFCAP00000027402	RNA polymerase I and III subunit C.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.999
POLR1C	TWISTNB	ENSFCAP00000009027	ENSFCAP00000021875	RNA polymerase I and III subunit C.	TWIST neighbor.	0.999