Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
VPS13AVacuolar protein sorting-associated protein 13A isoform X1. (3160 aa)    
Predicted Functional Partners:
VAPB
Vesicle-associated membrane protein-associated protein B/C.
    
 
 0.762
VAPA
Vesicle-associated membrane protein-associated protein A isoform X1.
    
 
 0.707
VPS35
Vacuolar protein sorting-associated protein 35.
   
 
 0.696
DBR1
Lariat debranching enzyme.
    
   0.667
LGALS12
Galectin-12 isoform X1.
    
 
 0.612
VPS13B
Vacuolar protein sorting-associated protein 13B isoform X1.
   
  
 0.605
SYNJ1
Synaptojanin-1 isoform X1.
   
 
 0.600
DNAJC7
DnaJ homolog subfamily C member 7 isoform X1.
    
   0.597
RINT1
RAD50-interacting protein 1 isoform X1.
      
 0.597
ZW10
Centromere/kinetochore protein zw10 homolog isoform X1.
      
 0.584
Your Current Organism:
Panthera pardus
NCBI taxonomy Id: 9691
Other names: Leo pardus, P. pardus, leopard
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