Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ATF1 | LOC109253687 | ENSPPRP00000023849 | ENSPPRP00000002740 | Activating transcription factor 1. | LOW QUALITY PROTEIN: COUP transcription factor 2-like. | 0.465 |
ATF1 | TOMM40 | ENSPPRP00000023849 | ENSPPRP00000018598 | Activating transcription factor 1. | Mitochondrial import receptor subunit TOM40 homolog isoform X1. | 0.618 |
AUTS2 | LOC109253687 | ENSPPRP00000020062 | ENSPPRP00000002740 | Autism susceptibility gene 2 protein. | LOW QUALITY PROTEIN: COUP transcription factor 2-like. | 0.450 |
AUTS2 | PAX7 | ENSPPRP00000020062 | ENSPPRP00000012165 | Autism susceptibility gene 2 protein. | Paired box 7. | 0.507 |
ENSPPRP00000017491 | LOC109253687 | ENSPPRP00000017491 | ENSPPRP00000002740 | annotation not available | LOW QUALITY PROTEIN: COUP transcription factor 2-like. | 0.465 |
ENSPPRP00000017491 | TOMM40 | ENSPPRP00000017491 | ENSPPRP00000018598 | annotation not available | Mitochondrial import receptor subunit TOM40 homolog isoform X1. | 0.618 |
LOC109253687 | ATF1 | ENSPPRP00000002740 | ENSPPRP00000023849 | LOW QUALITY PROTEIN: COUP transcription factor 2-like. | Activating transcription factor 1. | 0.465 |
LOC109253687 | AUTS2 | ENSPPRP00000002740 | ENSPPRP00000020062 | LOW QUALITY PROTEIN: COUP transcription factor 2-like. | Autism susceptibility gene 2 protein. | 0.450 |
LOC109253687 | ENSPPRP00000017491 | ENSPPRP00000002740 | ENSPPRP00000017491 | LOW QUALITY PROTEIN: COUP transcription factor 2-like. | annotation not available | 0.465 |
LOC109253687 | MED1 | ENSPPRP00000002740 | ENSPPRP00000023538 | LOW QUALITY PROTEIN: COUP transcription factor 2-like. | Mediator of RNA polymerase II transcription subunit 1 isoform X1. | 0.442 |
LOC109253687 | NCOR1 | ENSPPRP00000002740 | ENSPPRP00000008089 | LOW QUALITY PROTEIN: COUP transcription factor 2-like. | Nuclear receptor corepressor 1 isoform X1. | 0.504 |
LOC109253687 | NCOR2 | ENSPPRP00000002740 | ENSPPRP00000028685 | LOW QUALITY PROTEIN: COUP transcription factor 2-like. | Nuclear receptor corepressor 2. | 0.524 |
LOC109253687 | PAX7 | ENSPPRP00000002740 | ENSPPRP00000012165 | LOW QUALITY PROTEIN: COUP transcription factor 2-like. | Paired box 7. | 0.523 |
LOC109253687 | POLR2B | ENSPPRP00000002740 | ENSPPRP00000005250 | LOW QUALITY PROTEIN: COUP transcription factor 2-like. | DNA-directed RNA polymerase II subunit RPB2. | 0.593 |
LOC109253687 | POLR3A | ENSPPRP00000002740 | ENSPPRP00000006803 | LOW QUALITY PROTEIN: COUP transcription factor 2-like. | DNA-directed RNA polymerase III subunit RPC1 isoform X1. | 0.460 |
LOC109253687 | TOMM40 | ENSPPRP00000002740 | ENSPPRP00000018598 | LOW QUALITY PROTEIN: COUP transcription factor 2-like. | Mitochondrial import receptor subunit TOM40 homolog isoform X1. | 0.513 |
MED1 | LOC109253687 | ENSPPRP00000023538 | ENSPPRP00000002740 | Mediator of RNA polymerase II transcription subunit 1 isoform X1. | LOW QUALITY PROTEIN: COUP transcription factor 2-like. | 0.442 |
MED1 | NCOR1 | ENSPPRP00000023538 | ENSPPRP00000008089 | Mediator of RNA polymerase II transcription subunit 1 isoform X1. | Nuclear receptor corepressor 1 isoform X1. | 0.548 |
MED1 | NCOR2 | ENSPPRP00000023538 | ENSPPRP00000028685 | Mediator of RNA polymerase II transcription subunit 1 isoform X1. | Nuclear receptor corepressor 2. | 0.583 |
MED1 | POLR2B | ENSPPRP00000023538 | ENSPPRP00000005250 | Mediator of RNA polymerase II transcription subunit 1 isoform X1. | DNA-directed RNA polymerase II subunit RPB2. | 0.832 |
page 1 of 3