STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HFM1Probable ATP-dependent DNA helicase HFM1 isoform X1. (1440 aa)    
Predicted Functional Partners:
PRPF8
Pre-mRNA-processing-splicing factor 8.
   
 0.939
PRPF6
Pre-mRNA-processing factor 6.
   
 0.911
ASCC2
Activating signal cointegrator 1 complex subunit 2 isoform X1.
    
 0.868
SNRNP40
U5 small nuclear ribonucleoprotein 40 kDa protein.
   
 0.836
SART1
U4/U6.U5 tri-snRNP-associated protein 1 isoform X1.
   
 0.810
SF3B3
Splicing factor 3B subunit 3 isoform X1.
   
 
 0.799
PRPF31
U4/U6 small nuclear ribonucleoprotein PRP31.
    
 0.799
SNW1
SNW domain-containing protein 1.
    
 
 0.793
XAB2
Pre-mRNA-splicing factor SYF1.
    
 
 0.792
PRPF3
U4/U6 small nuclear ribonucleoprotein Prp3 isoform X1.
    
 0.790
Your Current Organism:
Panthera pardus
NCBI taxonomy Id: 9691
Other names: Leo pardus, P. pardus, leopard
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.