STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MAP1LC3CMicrotubule-associated proteins 1A/1B light chain 3C. (138 aa)    
Predicted Functional Partners:
NBR1
Next to BRCA1 gene 1 protein isoform X1.
   
 0.968
MAP1LC3B
Microtubule-associated proteins 1A/1B light chain 3B.
  
  
 
0.926
MAP1LC3A
Microtubule-associated proteins 1A/1B light chain 3A.
  
  
 
0.926
ATG3
Ubiquitin-like-conjugating enzyme ATG3.
   
 0.821
CALCOCO2
Calcium binding and coiled-coil domain 2.
   
 0.783
ATG7
Ubiquitin-like modifier-activating enzyme ATG7.
   
 0.779
MIB2
Mindbomb E3 ubiquitin protein ligase 2.
   
 0.710
ATG4B
Cysteine protease ATG4B isoform X1.
   
 0.702
SQSTM1
Sequestosome-1 isoform X1.
   
 0.693
ATG5
Autophagy protein 5 isoform X1.
   
 0.681
Your Current Organism:
Panthera pardus
NCBI taxonomy Id: 9691
Other names: Leo pardus, P. pardus, leopard
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.