LOC101367294 protein (Odobenus rosmarus) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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a 3D structure is known or predicted

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Edges represent protein-protein associations

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Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

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Score

LOC101367294

60S ribosomal protein L29-like. (165 aa)

Predicted Functional Partners:

FAU

0.998

LOC105757892

0.998

LOC105758044

0.998

RPL38

0.986

RPL14

0.986

RPL21

0.986

RPL19

0.985

RPL37

0.985

RPL27

0.985

RPL5

0.985

Your Current Organism:

Odobenus rosmarus

NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FAU	LOC101367294	A0A2U3VHA3	A0A2U3VBX0	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	60S ribosomal protein L29-like.	0.998
FAU	LOC105757892	A0A2U3VHA3	A0A2U3ZP95	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.991
FAU	LOC105758044	A0A2U3VHA3	A0A2U3ZRP0	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.991
FAU	RPL14	A0A2U3VHA3	A0A2U3WSG3	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	60S ribosomal protein L14.	0.998
FAU	RPL19	A0A2U3VHA3	A0A2U3VJP8	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	0.999
FAU	RPL21	A0A2U3VHA3	A0A2U3ZVA3	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	60S ribosomal protein L21.	0.999
FAU	RPL27	A0A2U3VHA3	A0A2U3WNJ2	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family.	0.996
FAU	RPL37	A0A2U3VHA3	A0A2U3WK10	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Ribosomal protein L37; Binds to the 23S rRNA.	0.995
FAU	RPL38	A0A2U3VHA3	A0A2U3W1M3	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	60S ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.	0.998
FAU	RPL5	A0A2U3VHA3	A0A2U3ZHW9	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	60S ribosomal protein L5 isoform X1.	0.998
LOC101367294	FAU	A0A2U3VBX0	A0A2U3VHA3	60S ribosomal protein L29-like.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.998
LOC101367294	LOC105757892	A0A2U3VBX0	A0A2U3ZP95	60S ribosomal protein L29-like.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.998
LOC101367294	LOC105758044	A0A2U3VBX0	A0A2U3ZRP0	60S ribosomal protein L29-like.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.998
LOC101367294	RPL14	A0A2U3VBX0	A0A2U3WSG3	60S ribosomal protein L29-like.	60S ribosomal protein L14.	0.986
LOC101367294	RPL19	A0A2U3VBX0	A0A2U3VJP8	60S ribosomal protein L29-like.	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	0.985
LOC101367294	RPL21	A0A2U3VBX0	A0A2U3ZVA3	60S ribosomal protein L29-like.	60S ribosomal protein L21.	0.986
LOC101367294	RPL27	A0A2U3VBX0	A0A2U3WNJ2	60S ribosomal protein L29-like.	60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family.	0.985
LOC101367294	RPL37	A0A2U3VBX0	A0A2U3WK10	60S ribosomal protein L29-like.	Ribosomal protein L37; Binds to the 23S rRNA.	0.985
LOC101367294	RPL38	A0A2U3VBX0	A0A2U3W1M3	60S ribosomal protein L29-like.	60S ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.	0.986
LOC101367294	RPL5	A0A2U3VBX0	A0A2U3ZHW9	60S ribosomal protein L29-like.	60S ribosomal protein L5 isoform X1.	0.985

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Network Stats

number of nodes:

11

number of edges:

20

average node degree:

3.64

avg. local clustering coefficient:

0.829

expected number of edges:

11

PPI enrichment p-value:

0.00667

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0008654

Phospholipid biosynthetic process

8 of 37

1.88

4.02

3.63e-11

GO:0006650

Glycerophospholipid metabolic process

3 of 12

1.95

1.55

0.00079

GO:0044249

Cellular biosynthetic process

10 of 726

0.69

0.61

7.66e-05

GO:1901576

Organic substance biosynthetic process

10 of 756

0.67

0.59

9.28e-05

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0016780

Phosphotransferase activity, for other substituted phosphate groups

3 of 10

2.03

1.26

0.0037

Reference Publications (PubMed)

publication

(year) title

count in network

strength

signal

false discovery rate

PMID:23500459

(2013) Bacterial lipids: metabolism and membrane homeostasis.

4 of 16

1.95

1.74

0.00030

PMID:32887610

(2020) Inducible intracellular membranes: molecular aspects and emerging applications.

3 of 7

2.18

1.45

0.0018

PMID:21255114

(2011) Remodelling of the Vibrio cholerae membrane by incorporation of exogenous fatty acids from host and aquatic environments.

2 of 2

2.55

0.87

0.0265

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:1421

Glycerophospholipid metabolism

7 of 13

2.28

5.18

8.75e-12

CL:1373

Fatty acid biosynthesis, and Glycerophospholipid metabolism

8 of 37

1.88

4.15

1.23e-11

CL:1423

Glycerophospholipid metabolism

4 of 5

2.45

3.13

1.00e-06

CL:1437

Alditol phosphate metabolic process, and Phospholipid biosynthesis

2 of 5

2.15

0.84

0.0281

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

rsp00564

Glycerophospholipid metabolism

7 of 17

2.16

5.04

4.64e-12

rsp00561

Glycerolipid metabolism

2 of 11

1.81

0.93

0.0154

rsp01110

Biosynthesis of secondary metabolites

8 of 346

0.91

0.9

3.09e-05

rsp01100

Metabolic pathways

8 of 774

0.56

0.4

0.0087

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0594

Phospholipid biosynthesis

5 of 6

2.47

4.18

6.87e-09

KW-0444

Lipid biosynthesis

6 of 25

1.93

3.44

8.27e-09

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