STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCDC180LOW QUALITY PROTEIN: coiled-coil domain-containing protein 180. (1754 aa)    
Predicted Functional Partners:
BLOC1S5
Biogenesis of lysosome-related organelles complex 1 subunit 5; Component of the BLOC-1 complex, a complex that is required for normal biogenesis of lysosome-related organelles (LRO).
      
 0.676
SCHIP1
Schwannomin-interacting protein 1 isoform X1.
      
 0.614
LRGUK
Leucine-rich repeat and guanylate kinase domain-containing protein.
   
 
 0.548
LOC101374345
Stimulated by retinoic acid gene 6 protein-like.
 
      0.539
HHAT
Protein-cysteine N-palmitoyltransferase HHAT; Belongs to the membrane-bound acyltransferase family.
      
 0.522
LRP1
Prolow-density lipoprotein receptor-related protein 1 isoform X1.
      
 0.521
TDRD7
Tudor domain-containing protein 7 isoform X1.
 
    
 0.471
LOC101369723
LOW QUALITY PROTEIN: protein FAM92A1-like.
      
 0.438
Your Current Organism:
Odobenus rosmarus
NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus
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