LOC101371526 protein (Odobenus rosmarus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC101371526

Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C-like. (465 aa)

Predicted Functional Partners:

CDK17

0.457

FIGNL2

0.455

FIGN

0.455

PPP1R1C

0.454

SUSD4

0.449

TMEM263

0.447

POLR3C

0.446

TCP11L2

0.446

CHORDC1

0.443

POLR3B

0.441

Your Current Organism:

Odobenus rosmarus

NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDK17	LOC101371526	A0A2U3VXV1	A0A2U3VEL4	Cyclin-dependent kinase 17.	Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C-like.	0.457
CDK17	SUSD4	A0A2U3VXV1	A0A2U3ZT40	Cyclin-dependent kinase 17.	Sushi domain-containing protein 4 isoform X1.	0.719
CHORDC1	LOC101371526	A0A2U3WRR5	A0A2U3VEL4	Cysteine and histidine-rich domain-containing protein 1 isoform X1.	Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C-like.	0.443
CHORDC1	POLR3C	A0A2U3WRR5	A0A2U3VSZ5	Cysteine and histidine-rich domain-containing protein 1 isoform X1.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.631
FIGN	LOC101371526	A0A2U3ZQI6	A0A2U3VEL4	Fidgetin; Belongs to the AAA ATPase family.	Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C-like.	0.455
FIGN	PPP1R1C	A0A2U3ZQI6	A0A2U3ZGN9	Fidgetin; Belongs to the AAA ATPase family.	Protein phosphatase 1 regulatory subunit 1C isoform X1.	0.524
FIGNL2	LOC101371526	A0A2U3VZ51	A0A2U3VEL4	Putative fidgetin-like protein 2.	Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C-like.	0.455
FIGNL2	PPP1R1C	A0A2U3VZ51	A0A2U3ZGN9	Putative fidgetin-like protein 2.	Protein phosphatase 1 regulatory subunit 1C isoform X1.	0.524
LOC101371526	CDK17	A0A2U3VEL4	A0A2U3VXV1	Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C-like.	Cyclin-dependent kinase 17.	0.457
LOC101371526	CHORDC1	A0A2U3VEL4	A0A2U3WRR5	Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C-like.	Cysteine and histidine-rich domain-containing protein 1 isoform X1.	0.443
LOC101371526	FIGN	A0A2U3VEL4	A0A2U3ZQI6	Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C-like.	Fidgetin; Belongs to the AAA ATPase family.	0.455
LOC101371526	FIGNL2	A0A2U3VEL4	A0A2U3VZ51	Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C-like.	Putative fidgetin-like protein 2.	0.455
LOC101371526	POLR3B	A0A2U3VEL4	A0A2U3WT91	Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C-like.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.441
LOC101371526	POLR3C	A0A2U3VEL4	A0A2U3VSZ5	Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C-like.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.446
LOC101371526	PPP1R1C	A0A2U3VEL4	A0A2U3ZGN9	Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C-like.	Protein phosphatase 1 regulatory subunit 1C isoform X1.	0.454
LOC101371526	SUSD4	A0A2U3VEL4	A0A2U3ZT40	Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C-like.	Sushi domain-containing protein 4 isoform X1.	0.449
LOC101371526	TCP11L2	A0A2U3VEL4	A0A2U3WT93	Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C-like.	T-complex protein 11-like protein 2.	0.446
LOC101371526	TMEM263	A0A2U3VEL4	A0A2U3WT92	Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C-like.	Transmembrane protein 263.	0.447
POLR3B	LOC101371526	A0A2U3WT91	A0A2U3VEL4	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C-like.	0.441
POLR3B	POLR3C	A0A2U3WT91	A0A2U3VSZ5	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.990