STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HERC4Probable E3 ubiquitin-protein ligase HERC4 isoform X1. (1057 aa)    
Predicted Functional Partners:
ZMYM5
Zinc finger MYM-type protein 5.
    
 
 0.719
RCCD1
RCC1 domain-containing protein 1.
    
0.693
ISG15
Ubiquitin-like protein ISG15.
   
 0.648
NCK2
Cytoplasmic protein.
      
 0.620
NCK1
Cytoplasmic protein.
      
 0.620
MRTO4
Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.
    
 
 0.617
TRIP12
E3 ubiquitin-protein ligase TRIP12 isoform X1.
   
 
0.583
UBE2A
Ubiquitin-conjugating enzyme E2 A isoform X1; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.580
UBE2O
E2/E3 hybrid ubiquitin-protein ligase UBE2O.
    
 0.574
ANKRD46
Ankyrin repeat domain-containing protein 46.
   
 
 0.574
Your Current Organism:
Odobenus rosmarus
NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.