STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CABP4Calcium-binding protein 4. (278 aa)    
Predicted Functional Partners:
LRIT3
Leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 3.
   
 0.783
CACNA1F
Voltage-dependent L-type calcium channel subunit alpha; Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death; Belongs to the calcium channel alpha-1 subunit (TC 1.A.1.11) family.
   
 
 0.777
GPR152
Probable G-protein coupled receptor 152.
   
 0.763
PPP1R26
Protein phosphatase 1 regulatory subunit 26.
      
 0.730
CACNA2D4
Voltage-dependent calcium channel subunit alpha-2/delta-4.
     
 0.717
PTRH1
Probable peptidyl-tRNA hydrolase.
      
 0.707
PITPNM1
Membrane-associated phosphatidylinositol transfer protein 1.
    
 
 0.706
POMGNT1
Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 isoform X1.
      
 0.698
CASK
Peripheral plasma membrane protein CASK; Belongs to the MAGUK family.
    
 0.636
RPS6KB2
Ribosomal protein S6 kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. S6 kinase subfamily.
    
 0.636
Your Current Organism:
Odobenus rosmarus
NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus
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