LRFN4 protein (Odobenus rosmarus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LRFN4

Leucine-rich repeat and fibronectin type-III domain-containing protein 4. (636 aa)

Predicted Functional Partners:

PTPRF

0.701

PTPRD

0.687

ADGRL3

0.663

ADGRL1

0.663

ADGRL2

0.663

DUSP27

0.654

EFHB

0.648

ZNF331

0.626

RAVER1

0.620

NTNG1

0.596

Your Current Organism:

Odobenus rosmarus

NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ADGRL1	LRFN4	A0A2U3VUI5	A0A2U3VGM2	Latrophilin-1 isoform X1; Belongs to the G-protein coupled receptor 2 family.	Leucine-rich repeat and fibronectin type-III domain-containing protein 4.	0.663
ADGRL2	LRFN4	A0A2U3WQ08	A0A2U3VGM2	Latrophilin-2 isoform X1; Belongs to the G-protein coupled receptor 2 family.	Leucine-rich repeat and fibronectin type-III domain-containing protein 4.	0.663
ADGRL3	LRFN4	A0A2U3VJF2	A0A2U3VGM2	Latrophilin-3 isoform X1; Belongs to the G-protein coupled receptor 2 family.	Leucine-rich repeat and fibronectin type-III domain-containing protein 4.	0.663
DUSP27	EFHB	A0A2U3WHY5	A0A2U3VS48	Inactive dual specificity phosphatase 27; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.	EF-hand domain-containing family member B.	0.658
DUSP27	LRFN4	A0A2U3WHY5	A0A2U3VGM2	Inactive dual specificity phosphatase 27; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.	Leucine-rich repeat and fibronectin type-III domain-containing protein 4.	0.654
DUSP27	RAVER1	A0A2U3WHY5	A0A2U3ZE90	Inactive dual specificity phosphatase 27; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.	Ribonucleoprotein PTB-binding 1 isoform X1.	0.621
DUSP27	ZNF331	A0A2U3WHY5	A0A2U3WL56	Inactive dual specificity phosphatase 27; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.	Zinc finger protein 331.	0.532
EFHB	DUSP27	A0A2U3VS48	A0A2U3WHY5	EF-hand domain-containing family member B.	Inactive dual specificity phosphatase 27; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.	0.658
EFHB	LRFN4	A0A2U3VS48	A0A2U3VGM2	EF-hand domain-containing family member B.	Leucine-rich repeat and fibronectin type-III domain-containing protein 4.	0.648
EFHB	RAVER1	A0A2U3VS48	A0A2U3ZE90	EF-hand domain-containing family member B.	Ribonucleoprotein PTB-binding 1 isoform X1.	0.695
EFHB	ZNF331	A0A2U3VS48	A0A2U3WL56	EF-hand domain-containing family member B.	Zinc finger protein 331.	0.526
LRFN4	ADGRL1	A0A2U3VGM2	A0A2U3VUI5	Leucine-rich repeat and fibronectin type-III domain-containing protein 4.	Latrophilin-1 isoform X1; Belongs to the G-protein coupled receptor 2 family.	0.663
LRFN4	ADGRL2	A0A2U3VGM2	A0A2U3WQ08	Leucine-rich repeat and fibronectin type-III domain-containing protein 4.	Latrophilin-2 isoform X1; Belongs to the G-protein coupled receptor 2 family.	0.663
LRFN4	ADGRL3	A0A2U3VGM2	A0A2U3VJF2	Leucine-rich repeat and fibronectin type-III domain-containing protein 4.	Latrophilin-3 isoform X1; Belongs to the G-protein coupled receptor 2 family.	0.663
LRFN4	DUSP27	A0A2U3VGM2	A0A2U3WHY5	Leucine-rich repeat and fibronectin type-III domain-containing protein 4.	Inactive dual specificity phosphatase 27; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.	0.654
LRFN4	EFHB	A0A2U3VGM2	A0A2U3VS48	Leucine-rich repeat and fibronectin type-III domain-containing protein 4.	EF-hand domain-containing family member B.	0.648
LRFN4	NTNG1	A0A2U3VGM2	A0A2U3WB49	Leucine-rich repeat and fibronectin type-III domain-containing protein 4.	netrin-G1.	0.596
LRFN4	PTPRD	A0A2U3VGM2	A0A2U3WBY4	Leucine-rich repeat and fibronectin type-III domain-containing protein 4.	Receptor-type tyrosine-protein phosphatase delta isoform X1.	0.687
LRFN4	PTPRF	A0A2U3VGM2	A0A2U3VYN5	Leucine-rich repeat and fibronectin type-III domain-containing protein 4.	Receptor-type tyrosine-protein phosphatase F isoform X1.	0.701
LRFN4	RAVER1	A0A2U3VGM2	A0A2U3ZE90	Leucine-rich repeat and fibronectin type-III domain-containing protein 4.	Ribonucleoprotein PTB-binding 1 isoform X1.	0.620