STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRPF40Apre-mRNA-processing factor 40 homolog A isoform X1. (994 aa)    
Predicted Functional Partners:
RBM25
RNA-binding protein 25.
   
 0.929
PRPF40B
pre-mRNA-processing factor 40 homolog B isoform X1.
  
 
 
0.905
LOC101386064
LOW QUALITY PROTEIN: pre-mRNA-processing factor 40 homolog A-like.
  
  
 
0.900
RBM39
RNA-binding protein 39 isoform X2.
   
  0.844
DDX5
Probable ATP-dependent RNA helicase DDX5 isoform X1; Belongs to the DEAD box helicase family.
   
 0.795
DHX9
ATP-dependent RNA helicase A isoform X1.
   
 0.790
LUC7L3
Luc7-like protein 3 isoform X1.
   
 0.784
SRRT
Serrate RNA effector molecule homolog.
   
  0.782
SRRM2
Serine/arginine repetitive matrix protein 2.
    
 0.771
HTATSF1
HIV Tat-specific factor 1 isoform X1.
    
 0.766
Your Current Organism:
Odobenus rosmarus
NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.