STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRIM54Tripartite motif-containing protein 54. (363 aa)    
Predicted Functional Partners:
TRIM66
LOW QUALITY PROTEIN: tripartite motif-containing protein 66.
      
 0.711
TRIM47
Tripartite motif-containing protein 47.
      
 0.674
COPS6
COP9 signalosome complex subunit 6.
    
 
 0.662
TRIM23
E3 ubiquitin-protein ligase TRIM23.
    
 0.642
TRIM69
E3 ubiquitin-protein ligase TRIM69 isoform X1.
    
 
 0.627
RAD23A
UV excision repair protein RAD23 homolog A isoform X1.
    
 0.591
UBA5
Ubiquitin-like modifier-activating enzyme 5 isoform X1.
     
 0.583
TRIM15
LOW QUALITY PROTEIN: tripartite motif-containing protein 15.
      
 0.565
TRIM44
Tripartite motif-containing protein 44.
    
 
 0.553
TRIM41
E3 ubiquitin-protein ligase TRIM41 isoform X1.
      
 0.541
Your Current Organism:
Odobenus rosmarus
NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.