STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OGFOD1Prolyl 3-hydroxylase OGFOD1. (545 aa)    
Predicted Functional Partners:
SYCP3
Synaptonemal complex protein 3 isoform X1.
   
 
 0.855
TUFM
Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
   0.739
CAPRIN1
Caprin-1.
      
 0.725
HERPUD2
annotation not available
      
 0.724
ATXN2
Ataxin-2.
      
 0.671
CPOX
Oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial.
   
  
 0.655
G3BP1
Ras GTPase-activating protein-binding protein 1.
   
  
 0.634
TSR1
pre-rRNA-processing protein TSR1 homolog isoform X1.
   
    0.588
POLR3A
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
    0.572
BMS1
Ribosome biogenesis protein BMS1 homolog isoform X1.
   
    0.570
Your Current Organism:
Odobenus rosmarus
NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus
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