STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATG16L1Autophagy-related protein 16-1 isoform X1. (607 aa)    
Predicted Functional Partners:
ATG5
Autophagy protein 5; Involved in autophagic vesicle formation.
   
 0.999
ATG12
Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.
    
 0.999
WIPI2
WD repeat domain phosphoinositide-interacting protein 2 isoform X1.
   
 0.998
ATG3
Autophagy-related protein 3.
   
 0.997
RAB33B
Ras-related protein Rab-33B.
    
 0.996
WIPI1
WD repeat domain phosphoinositide-interacting protein 1 isoform X1.
   
 0.988
NOD2
Nucleotide-binding oligomerization domain-containing protein 2.
    
 0.988
RB1CC1
RB1-inducible coiled-coil protein 1 isoform X1.
   
 0.985
GABARAPL1
Gamma-aminobutyric acid receptor-associated protein-like 1.
    
 0.976
NOD1
Nucleotide-binding oligomerization domain-containing protein 1.
    
 0.974
Your Current Organism:
Odobenus rosmarus
NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus
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