STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LIMCH1LIM and calponin homology domains-containing protein 1 isoform X1. (1470 aa)    
Predicted Functional Partners:
ZNF445
Zinc finger protein 445.
    
 
 0.729
TXNDC12
Thioredoxin domain-containing protein 12.
    
 0.637
EPS8L2
Epidermal growth factor receptor kinase substrate 8-like protein 2.
   
 
 0.627
TMEM69
LOW QUALITY PROTEIN: transmembrane protein 69.
      
 0.614
LOC101369029
Zinc finger protein 28 homolog isoform X1.
    
 
 0.611
HIGD1B
HIG1 domain family member 1B.
   
  
 0.574
CDH24
Cadherin-24.
   
 
 0.555
ZNF827
Zinc finger protein 827 isoform X1.
    
 
 0.552
SHISA3
Protein shisa-3 homolog.
   
  
 0.547
GAS2L2
GAS2-like protein 2.
   
 
 0.541
Your Current Organism:
Odobenus rosmarus
NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.