STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VPS13AVacuolar protein sorting-associated protein 13A isoform X1. (3170 aa)    
Predicted Functional Partners:
LGALS12
Galectin.
   
 
 0.770
PLA2G15
Group XV phospholipase A2.
      
 0.648
VAPA
Vesicle-associated membrane protein-associated protein A isoform X1.
    
 
 0.644
DCAF17
DDB1- and CUL4-associated factor 17 isoform X1.
      
 0.621
PIGG
GPI ethanolamine phosphate transferase 2 isoform X1.
      
 0.619
PSD3
PH and SEC7 domain-containing protein 3.
      
 0.565
CCDC176
Basal body-orientation factor 1.
   
  
 0.529
EHBP1L1
EH domain-binding protein 1-like protein 1.
   
  
 0.528
TMEM161B
Transmembrane protein 161B.
      
 0.524
GGPS1
Geranylgeranyl pyrophosphate synthase isoform X1; Belongs to the FPP/GGPP synthase family.
      
 0.524
Your Current Organism:
Odobenus rosmarus
NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.