SPSB4 protein (Odobenus rosmarus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SPSB4

SPRY domain-containing SOCS box protein 4. (273 aa)

Predicted Functional Partners:

TCEB1

0.894

CUL5

0.766

SPSB3

0.742

MYCBP2

0.648

TCEB2

0.644

NWD2

0.623

RIMS4

0.620

WDR93

0.617

ASB6

0.603

ASB7

0.591

Your Current Organism:

Odobenus rosmarus

NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASB6	ASB7	A0A2U3VD53	A0A2U3ZKW5	Ankyrin repeat and SOCS box protein 6 isoform X1.	Ankyrin repeat and SOCS box protein 7 isoform X1.	0.783
ASB6	CUL5	A0A2U3VD53	A0A2U3VZM4	Ankyrin repeat and SOCS box protein 6 isoform X1.	Cullin-5; Belongs to the cullin family.	0.840
ASB6	SPSB3	A0A2U3VD53	A0A2U3W543	Ankyrin repeat and SOCS box protein 6 isoform X1.	SPRY domain-containing SOCS box protein 3 isoform X1.	0.557
ASB6	SPSB4	A0A2U3VD53	A0A2U3VQ87	Ankyrin repeat and SOCS box protein 6 isoform X1.	SPRY domain-containing SOCS box protein 4.	0.603
ASB6	TCEB1	A0A2U3VD53	A0A2U3W6X4	Ankyrin repeat and SOCS box protein 6 isoform X1.	Transcription elongation factor B polypeptide 1; Belongs to the SKP1 family.	0.588
ASB6	TCEB2	A0A2U3VD53	A0A2U3W551	Ankyrin repeat and SOCS box protein 6 isoform X1.	Transcription elongation factor B polypeptide 2.	0.513
ASB7	ASB6	A0A2U3ZKW5	A0A2U3VD53	Ankyrin repeat and SOCS box protein 7 isoform X1.	Ankyrin repeat and SOCS box protein 6 isoform X1.	0.783
ASB7	CUL5	A0A2U3ZKW5	A0A2U3VZM4	Ankyrin repeat and SOCS box protein 7 isoform X1.	Cullin-5; Belongs to the cullin family.	0.818
ASB7	SPSB3	A0A2U3ZKW5	A0A2U3W543	Ankyrin repeat and SOCS box protein 7 isoform X1.	SPRY domain-containing SOCS box protein 3 isoform X1.	0.462
ASB7	SPSB4	A0A2U3ZKW5	A0A2U3VQ87	Ankyrin repeat and SOCS box protein 7 isoform X1.	SPRY domain-containing SOCS box protein 4.	0.591
ASB7	TCEB1	A0A2U3ZKW5	A0A2U3W6X4	Ankyrin repeat and SOCS box protein 7 isoform X1.	Transcription elongation factor B polypeptide 1; Belongs to the SKP1 family.	0.563
ASB7	TCEB2	A0A2U3ZKW5	A0A2U3W551	Ankyrin repeat and SOCS box protein 7 isoform X1.	Transcription elongation factor B polypeptide 2.	0.473
CUL5	ASB6	A0A2U3VZM4	A0A2U3VD53	Cullin-5; Belongs to the cullin family.	Ankyrin repeat and SOCS box protein 6 isoform X1.	0.840
CUL5	ASB7	A0A2U3VZM4	A0A2U3ZKW5	Cullin-5; Belongs to the cullin family.	Ankyrin repeat and SOCS box protein 7 isoform X1.	0.818
CUL5	SPSB3	A0A2U3VZM4	A0A2U3W543	Cullin-5; Belongs to the cullin family.	SPRY domain-containing SOCS box protein 3 isoform X1.	0.801
CUL5	SPSB4	A0A2U3VZM4	A0A2U3VQ87	Cullin-5; Belongs to the cullin family.	SPRY domain-containing SOCS box protein 4.	0.766
CUL5	TCEB1	A0A2U3VZM4	A0A2U3W6X4	Cullin-5; Belongs to the cullin family.	Transcription elongation factor B polypeptide 1; Belongs to the SKP1 family.	0.999
CUL5	TCEB2	A0A2U3VZM4	A0A2U3W551	Cullin-5; Belongs to the cullin family.	Transcription elongation factor B polypeptide 2.	0.999
MYCBP2	SPSB3	A0A2U3WNM5	A0A2U3W543	E3 ubiquitin-protein ligase MYCBP2.	SPRY domain-containing SOCS box protein 3 isoform X1.	0.648
MYCBP2	SPSB4	A0A2U3WNM5	A0A2U3VQ87	E3 ubiquitin-protein ligase MYCBP2.	SPRY domain-containing SOCS box protein 4.	0.648