UBXN2B protein (Odobenus rosmarus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

UBXN2B

UBX domain-containing protein 2B. (330 aa)

Predicted Functional Partners:

VCP

0.955

UBXN7

0.935

ASPSCR1

0.929

FAF1

0.923

VCPIP1

0.918

PLAA

0.865

YOD1

0.859

UBXN10

0.857

DERL1

0.848

UBXN6

0.846

Your Current Organism:

Odobenus rosmarus

NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASPSCR1	FAF1	A0A2U3W8F3	A0A2U3VXV2	Tether containing UBX domain for GLUT4.	FAS-associated factor 1.	0.919
ASPSCR1	PLAA	A0A2U3W8F3	A0A2U3ZXH7	Tether containing UBX domain for GLUT4.	Phospholipase A-2-activating protein.	0.511
ASPSCR1	UBXN10	A0A2U3W8F3	A0A2U3VPT7	Tether containing UBX domain for GLUT4.	UBX domain-containing protein 10.	0.921
ASPSCR1	UBXN2B	A0A2U3W8F3	A0A2U3VTY5	Tether containing UBX domain for GLUT4.	UBX domain-containing protein 2B.	0.929
ASPSCR1	UBXN6	A0A2U3W8F3	A0A2U3VKD9	Tether containing UBX domain for GLUT4.	UBX domain-containing protein 6.	0.928
ASPSCR1	UBXN7	A0A2U3W8F3	A0A2U3VBQ2	Tether containing UBX domain for GLUT4.	UBX domain-containing protein 7.	0.982
ASPSCR1	VCP	A0A2U3W8F3	A0A2U3VCJ1	Tether containing UBX domain for GLUT4.	Transitional endoplasmic reticulum ATPase isoform X1; Belongs to the AAA ATPase family.	0.918
DERL1	FAF1	A0A2U3WMW0	A0A2U3VXV2	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	FAS-associated factor 1.	0.564
DERL1	UBXN2B	A0A2U3WMW0	A0A2U3VTY5	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	UBX domain-containing protein 2B.	0.848
DERL1	VCP	A0A2U3WMW0	A0A2U3VCJ1	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	Transitional endoplasmic reticulum ATPase isoform X1; Belongs to the AAA ATPase family.	0.967
FAF1	ASPSCR1	A0A2U3VXV2	A0A2U3W8F3	FAS-associated factor 1.	Tether containing UBX domain for GLUT4.	0.919
FAF1	DERL1	A0A2U3VXV2	A0A2U3WMW0	FAS-associated factor 1.	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	0.564
FAF1	PLAA	A0A2U3VXV2	A0A2U3ZXH7	FAS-associated factor 1.	Phospholipase A-2-activating protein.	0.736
FAF1	UBXN2B	A0A2U3VXV2	A0A2U3VTY5	FAS-associated factor 1.	UBX domain-containing protein 2B.	0.923
FAF1	UBXN6	A0A2U3VXV2	A0A2U3VKD9	FAS-associated factor 1.	UBX domain-containing protein 6.	0.936
FAF1	UBXN7	A0A2U3VXV2	A0A2U3VBQ2	FAS-associated factor 1.	UBX domain-containing protein 7.	0.934
FAF1	VCP	A0A2U3VXV2	A0A2U3VCJ1	FAS-associated factor 1.	Transitional endoplasmic reticulum ATPase isoform X1; Belongs to the AAA ATPase family.	0.974
PLAA	ASPSCR1	A0A2U3ZXH7	A0A2U3W8F3	Phospholipase A-2-activating protein.	Tether containing UBX domain for GLUT4.	0.511
PLAA	FAF1	A0A2U3ZXH7	A0A2U3VXV2	Phospholipase A-2-activating protein.	FAS-associated factor 1.	0.736
PLAA	UBXN2B	A0A2U3ZXH7	A0A2U3VTY5	Phospholipase A-2-activating protein.	UBX domain-containing protein 2B.	0.865