ASPRV1 protein (Odobenus rosmarus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ASPRV1

LOW QUALITY PROTEIN: retroviral-like aspartic protease 1. (417 aa)

Predicted Functional Partners:

NIPAL4

0.666

PNPLA1

0.664

SEC11C

0.603

TGM1

0.545

CASP14

0.544

METAP2

0.523

KRT71

0.523

KRT73

0.523

FCGBP

0.523

PKP1

0.522

Your Current Organism:

Odobenus rosmarus

NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASPRV1	CASP14	A0A2U3VU31	A0A2U3WI38	LOW QUALITY PROTEIN: retroviral-like aspartic protease 1.	Caspase-14; Belongs to the peptidase C14A family.	0.544
ASPRV1	FCGBP	A0A2U3VU31	A0A2U3X5V0	LOW QUALITY PROTEIN: retroviral-like aspartic protease 1.	IgGFc-binding protein.	0.523
ASPRV1	KRT71	A0A2U3VU31	A0A2U3WCU6	LOW QUALITY PROTEIN: retroviral-like aspartic protease 1.	Keratin, type II cytoskeletal 71; Belongs to the intermediate filament family.	0.523
ASPRV1	KRT73	A0A2U3VU31	A0A2U3WCV3	LOW QUALITY PROTEIN: retroviral-like aspartic protease 1.	Keratin, type II cytoskeletal 73; Belongs to the intermediate filament family.	0.523
ASPRV1	METAP2	A0A2U3VU31	A0A2U3VXW1	LOW QUALITY PROTEIN: retroviral-like aspartic protease 1.	Methionine aminopeptidase 2; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Belongs to the peptidase M24A family. Methionine aminopeptidase eukaryotic type 2 subfamily.	0.523
ASPRV1	NIPAL4	A0A2U3VU31	A0A2U3ZL68	LOW QUALITY PROTEIN: retroviral-like aspartic protease 1.	Magnesium transporter NIPA4.	0.666
ASPRV1	PKP1	A0A2U3VU31	A0A2U3VEA2	LOW QUALITY PROTEIN: retroviral-like aspartic protease 1.	Plakophilin-1.	0.522
ASPRV1	PNPLA1	A0A2U3VU31	A0A2U3WLM3	LOW QUALITY PROTEIN: retroviral-like aspartic protease 1.	Patatin-like phospholipase domain-containing protein 1.	0.664
ASPRV1	SEC11C	A0A2U3VU31	A0A2U3WLP1	LOW QUALITY PROTEIN: retroviral-like aspartic protease 1.	Signal peptidase complex catalytic subunit SEC11.	0.603
ASPRV1	TGM1	A0A2U3VU31	A0A2U3W295	LOW QUALITY PROTEIN: retroviral-like aspartic protease 1.	Protein-glutamine gamma-glutamyltransferase K.	0.545
CASP14	ASPRV1	A0A2U3WI38	A0A2U3VU31	Caspase-14; Belongs to the peptidase C14A family.	LOW QUALITY PROTEIN: retroviral-like aspartic protease 1.	0.544
CASP14	NIPAL4	A0A2U3WI38	A0A2U3ZL68	Caspase-14; Belongs to the peptidase C14A family.	Magnesium transporter NIPA4.	0.445
CASP14	PNPLA1	A0A2U3WI38	A0A2U3WLM3	Caspase-14; Belongs to the peptidase C14A family.	Patatin-like phospholipase domain-containing protein 1.	0.447
CASP14	TGM1	A0A2U3WI38	A0A2U3W295	Caspase-14; Belongs to the peptidase C14A family.	Protein-glutamine gamma-glutamyltransferase K.	0.595
FCGBP	ASPRV1	A0A2U3X5V0	A0A2U3VU31	IgGFc-binding protein.	LOW QUALITY PROTEIN: retroviral-like aspartic protease 1.	0.523
KRT71	ASPRV1	A0A2U3WCU6	A0A2U3VU31	Keratin, type II cytoskeletal 71; Belongs to the intermediate filament family.	LOW QUALITY PROTEIN: retroviral-like aspartic protease 1.	0.523
KRT73	ASPRV1	A0A2U3WCV3	A0A2U3VU31	Keratin, type II cytoskeletal 73; Belongs to the intermediate filament family.	LOW QUALITY PROTEIN: retroviral-like aspartic protease 1.	0.523
METAP2	ASPRV1	A0A2U3VXW1	A0A2U3VU31	Methionine aminopeptidase 2; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Belongs to the peptidase M24A family. Methionine aminopeptidase eukaryotic type 2 subfamily.	LOW QUALITY PROTEIN: retroviral-like aspartic protease 1.	0.523
METAP2	SEC11C	A0A2U3VXW1	A0A2U3WLP1	Methionine aminopeptidase 2; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Belongs to the peptidase M24A family. Methionine aminopeptidase eukaryotic type 2 subfamily.	Signal peptidase complex catalytic subunit SEC11.	0.523
NIPAL4	ASPRV1	A0A2U3ZL68	A0A2U3VU31	Magnesium transporter NIPA4.	LOW QUALITY PROTEIN: retroviral-like aspartic protease 1.	0.666