STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRMT1tRNA (Guanine(26)-N(2))-dimethyltransferase isoform X1; Belongs to the class I-like SAM-binding methyltransferase superfamily. Trm1 family. (686 aa)    
Predicted Functional Partners:
TBL3
Transducin beta-like protein 3.
   
    0.710
HSPBP1
Hsp70-binding protein 1 isoform X1.
   
   0.693
RPF2
Ribosome production factor 2 homolog.
   
  
 0.667
DRG2
Developmentally-regulated GTP-binding protein 2.
  
   0.661
GADD45GIP1
Growth arrest and DNA damage-inducible proteins-interacting protein 1.
   
  
 0.635
TRMT6
tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6; Substrate-binding subunit of tRNA (adenine-N1-)- methyltransferase, which catalyzes the formation of N1-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA.
   
  
 0.624
NSUN6
Putative methyltransferase NSUN6; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
   
 
 0.613
CIRH1A
Cirhin isoform X2.
   
    0.611
DNMT1
DNA (cytosine-5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
      
 0.608
WDR46
WD repeat-containing protein 46 isoform X1.
   
    0.606
Your Current Organism:
Odobenus rosmarus
NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus
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