STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRAIPE3 ubiquitin-protein ligase TRAIP. (469 aa)    
Predicted Functional Partners:
FANCD2
Fanconi anemia group D2 protein.
   
 
 0.779
NEIL3
Endonuclease 8-like 3.
   
  
 0.774
LRR1
Leucine-rich repeat protein 1 isoform X1.
   
 
 0.738
FBXO5
F-box only protein 5.
   
  
 0.732
UFD1L
Ubiquitin fusion degradation protein 1 homolog isoform X1.
      
 0.697
CDC45
Cell division control protein 45 homolog isoform X1.
   
  
 0.676
USP37
Ubiquitin carboxyl-terminal hydrolase; Deubiquitinating enzyme that removes conjugated ubiquitin from specific proteins to regulate different cellular processes. Belongs to the peptidase C19 family.
  
 
 
 0.673
MCM10
Protein MCM10 homolog.
   
  
 0.634
ARIH1
RBR-type E3 ubiquitin transferase.
      
 0.626
DFFA
DNAation factor subunit alpha.
      
 0.621
Your Current Organism:
Odobenus rosmarus
NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.