STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RNF123E3 ubiquitin-protein ligase RNF123. (1315 aa)    
Predicted Functional Partners:
USP19
Ubiquitin carboxyl-terminal hydrolase 19.
   
 0.961
UBAC1
Ubiquitin-associated domain-containing protein 1.
   
 
 0.828
ST8SIA1
alpha-N-acetylneuraminide alpha-2,8-sialyltransferase isoform X1; Belongs to the glycosyltransferase 29 family.
    
 
 0.718
CCDC66
Coiled-coil domain-containing protein 66.
      
 0.712
USP11
Ubiquitin carboxyl-terminal hydrolase; Deubiquitinating enzyme that removes conjugated ubiquitin from specific proteins to regulate different cellular processes. Belongs to the peptidase C19 family.
   
 0.691
RNF111
E3 ubiquitin-protein ligase Arkadia isoform X1.
     
 0.624
SPATA9
Spermatogenesis-associated protein 9.
      
 0.620
PRCD
Progressive rod-cone degeneration protein.
      
 0.614
MON1A
Vacuolar fusion protein MON1 homolog A.
      
 0.614
USP4
Ubiquitin carboxyl-terminal hydrolase; Deubiquitinating enzyme that removes conjugated ubiquitin from specific proteins to regulate different cellular processes. Belongs to the peptidase C19 family.
   
 0.584
Your Current Organism:
Odobenus rosmarus
NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus
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