STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SYNDIG1LSynapse differentiation-inducing gene protein 1-like. (238 aa)    
Predicted Functional Partners:
TMEM108
Transmembrane protein 108.
      
 0.722
VRTN
Vertnin.
   
  
 0.673
TMEM233
Transmembrane protein 233.
      
 0.622
PROX2
Prospero homeobox protein 2.
      
 0.611
RIPPLY2
Protein ripply2.
      
 0.607
AREL1
Apoptosis-resistant E3 ubiquitin protein ligase 1.
      
 0.606
ANKRD13B
Ankyrin repeat domain-containing protein 13B.
      
 0.566
CACNA1F
Voltage-dependent L-type calcium channel subunit alpha; Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death; Belongs to the calcium channel alpha-1 subunit (TC 1.A.1.11) family.
   
  
 0.539
JAZF1
Juxtaposed with another zinc finger protein 1.
      
 0.533
HEATR4
HEAT repeat-containing protein 4.
      
 0.527
Your Current Organism:
Odobenus rosmarus
NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.