STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HARBI1Putative nuclease HARBI1. (349 aa)    
Predicted Functional Partners:
LOC101367633
Sulfotransferase; Belongs to the sulfotransferase 1 family.
      
 0.564
SHPK
Sedoheptulokinase.
   
  
 0.544
PIGZ
Mannosyltransferase.
      
 0.540
NAIF1
Nuclear apoptosis-inducing factor 1.
   
 
 0.535
KIAA0391
Mitochondrial ribonuclease P protein 3 isoform X1.
      
 0.535
CHPT1
Cholinephosphotransferase 1; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
      
 0.522
DOCK3
Dedicator of cytokinesis protein 3; Belongs to the DOCK family.
   
  
 0.487
GALNT1
Polypeptide N-acetylgalactosaminyltransferase.
      
 0.451
PIGL
N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase.
   
    0.447
SYNE2
LOW QUALITY PROTEIN: nesprin-2.
      
 0.434
Your Current Organism:
Odobenus rosmarus
NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus
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