STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LRPPRCLeucine-rich PPR motif-containing protein, mitochondrial. (1395 aa)    
Predicted Functional Partners:
LOC101368226
SRA stem-loop-interacting RNA-binding protein, mitochondrial.
   
 
 0.971
MRPS22
28S ribosomal protein S22, mitochondrial.
   
  
 0.739
MRPL45
39S ribosomal protein L45, mitochondrial isoform X1.
      
 0.698
GFM1
Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. Does not mediate the disassembly of ribosomes from messenger RNA at the termination of mito [...]
   
  
 0.691
PTCD3
Pentatricopeptide repeat domain-containing protein 3, mitochondrial.
   
  
 0.661
MRPL48
39S ribosomal protein L48, mitochondrial.
      
 0.654
SART3
Squamous cell carcinoma antigen recognized by T-cells 3 isoform X3.
    
 
 0.645
EPRS
Bifunctional glutamate/proline--tRNA ligase isoform X1.
   
 
 0.635
PTCD2
Pentatricopeptide repeat-containing protein 2, mitochondrial isoform X1.
  
   
 0.628
MPV17L2
Mpv17-like protein 2; Belongs to the peroxisomal membrane protein PXMP2/4 family.
      
 0.623
Your Current Organism:
Odobenus rosmarus
NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus
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