STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAB39ARas-related protein Rab-39A. (217 aa)    
Predicted Functional Partners:
RABGGTA
Geranylgeranyl transferase type-2 subunit alpha.
    
 0.892
ITSN2
Intersectin-2.
    
 0.827
RAB3IP
rab-3A-interacting protein isoform X1.
    
 0.823
ITSN1
Intersectin-1 isoform X1.
    
 0.740
RAB3GAP1
Rab3 GTPase-activating protein catalytic subunit isoform X1.
    
 
 0.718
RABL3
Rab-like protein 3.
   
0.662
CEP170B
Centrosomal protein of 170 kDa protein B isoform X1.
    
 0.642
CHM
Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.
    
 0.639
CHML
Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.
    
 0.639
RPRD2
Regulation of nuclear pre-mRNA domain-containing protein 2 isoform X1.
     
 0.634
Your Current Organism:
Odobenus rosmarus
NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus
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