STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TBrachyury protein isoform X1. (434 aa)    
Predicted Functional Partners:
MIXL1
Homeobox protein MIXL1.
   
 0.633
SNAI1
Zinc finger protein SNAI1.
    
 0.576
TBR1
T-box brain protein 1.
   
 
0.550
SOX17
Transcription factor SOX-17.
    
 0.542
EOMES
Eomesodermin homolog isoform X1.
   
 
0.511
NOTO
Homeobox protein notochord.
    
 0.499
FOXA2
Hepatocyte nuclear factor 3-beta.
    
 0.490
PTF1A
Pancreas transcription factor 1 subunit alpha.
   
 0.479
TBX10
T-box transcription factor TBX10.
  
 
0.450
POU5F1
POU domain protein.
   
 0.450
Your Current Organism:
Odobenus rosmarus
NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.