STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RDH16Retinol dehydrogenase 16; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (317 aa)    
Predicted Functional Partners:
LRAT
Lecithin retinol acyltransferase.
     
 0.929
LOC101378675
Cytochrome P450 26A1; Belongs to the cytochrome P450 family.
   
 0.926
BCO1
Beta,beta-carotene 15,15'-monooxygenase.
   
 
 0.919
ALDH1A3
Aldehyde dehydrogenase family 1 member A3 isoform X1; Belongs to the aldehyde dehydrogenase family.
   
 
 0.915
ALDH1A1
Retinal dehydrogenase 1 isoform X1; Belongs to the aldehyde dehydrogenase family.
   
 
 0.911
ALDH1A2
Retinal dehydrogenase 2 isoform X1; Belongs to the aldehyde dehydrogenase family.
   
 
 0.910
DGAT1
O-acyltransferase.
   
 
 0.908
RETSAT
LOW QUALITY PROTEIN: all-trans-retinol 13,14-reductase.
   
 
 0.908
LOC101369154
Cytochrome P450 27C1 isoform X1; Belongs to the cytochrome P450 family.
   
 
 0.906
AWAT2
acyl-CoA wax alcohol acyltransferase 2.
   
 
  0.905
Your Current Organism:
Odobenus rosmarus
NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus
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