AGAP2 protein (Odobenus rosmarus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AGAP2

arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 isoform X1. (1189 aa)

Predicted Functional Partners:

RRAGD

0.718

PPP1R9B

0.627

NEURL1

0.623

ZNFX1

0.621

UNC5B

0.586

MARK4

0.552

IQSEC2

0.552

DLGAP1

0.539

SYNGAP1

0.524

HM13

0.523

Your Current Organism:

Odobenus rosmarus

NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGAP2	DLGAP1	A0A2U3W1L5	A0A2U3WST9	arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 isoform X1.	Disks large-associated protein 1 isoform X1.	0.539
AGAP2	HM13	A0A2U3W1L5	A0A2U3VEZ7	arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 isoform X1.	Minor histocompatibility antigen H13 isoform X1.	0.523
AGAP2	IQSEC2	A0A2U3W1L5	A0A2U3ZNG8	arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 isoform X1.	IQ motif and SEC7 domain-containing protein 2 isoform X1.	0.552
AGAP2	MARK4	A0A2U3W1L5	A0A2U3VZL2	arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 isoform X1.	Non-specific serine/threonine protein kinase.	0.552
AGAP2	NEURL1	A0A2U3W1L5	A0A2U3W271	arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 isoform X1.	E3 ubiquitin-protein ligase NEURL1.	0.623
AGAP2	PPP1R9B	A0A2U3W1L5	A0A2U3VJY5	arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 isoform X1.	Neurabin-2.	0.627
AGAP2	RRAGD	A0A2U3W1L5	A0A2U3W805	arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 isoform X1.	Ras-related GTP-binding protein D.	0.718
AGAP2	SYNGAP1	A0A2U3W1L5	A0A2U3WGD3	arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 isoform X1.	ras/Rap GTPase-activating protein SynGAP.	0.524
AGAP2	UNC5B	A0A2U3W1L5	A0A2U3VG27	arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 isoform X1.	Netrin receptor UNC5B isoform X1.	0.586
AGAP2	ZNFX1	A0A2U3W1L5	A0A2U3WT85	arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 isoform X1.	NFX1-type zinc finger-containing protein 1.	0.621
DLGAP1	AGAP2	A0A2U3WST9	A0A2U3W1L5	Disks large-associated protein 1 isoform X1.	arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 isoform X1.	0.539
DLGAP1	IQSEC2	A0A2U3WST9	A0A2U3ZNG8	Disks large-associated protein 1 isoform X1.	IQ motif and SEC7 domain-containing protein 2 isoform X1.	0.570
DLGAP1	SYNGAP1	A0A2U3WST9	A0A2U3WGD3	Disks large-associated protein 1 isoform X1.	ras/Rap GTPase-activating protein SynGAP.	0.435
DLGAP1	ZNFX1	A0A2U3WST9	A0A2U3WT85	Disks large-associated protein 1 isoform X1.	NFX1-type zinc finger-containing protein 1.	0.527
HM13	AGAP2	A0A2U3VEZ7	A0A2U3W1L5	Minor histocompatibility antigen H13 isoform X1.	arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 isoform X1.	0.523
IQSEC2	AGAP2	A0A2U3ZNG8	A0A2U3W1L5	IQ motif and SEC7 domain-containing protein 2 isoform X1.	arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 isoform X1.	0.552
IQSEC2	DLGAP1	A0A2U3ZNG8	A0A2U3WST9	IQ motif and SEC7 domain-containing protein 2 isoform X1.	Disks large-associated protein 1 isoform X1.	0.570
IQSEC2	SYNGAP1	A0A2U3ZNG8	A0A2U3WGD3	IQ motif and SEC7 domain-containing protein 2 isoform X1.	ras/Rap GTPase-activating protein SynGAP.	0.543
IQSEC2	ZNFX1	A0A2U3ZNG8	A0A2U3WT85	IQ motif and SEC7 domain-containing protein 2 isoform X1.	NFX1-type zinc finger-containing protein 1.	0.639
MARK4	AGAP2	A0A2U3VZL2	A0A2U3W1L5	Non-specific serine/threonine protein kinase.	arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 isoform X1.	0.552