STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL21A1Collagen alpha-1(XXI) chain. (957 aa)    
Predicted Functional Partners:
COL22A1
Collagen alpha-1(XXII) chain.
  
 
0.864
COL4A6
Collagen alpha-6(IV) chain.
  
 
0.731
PLOD2
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2.
   
 0.661
COL8A1
Collagen alpha-1(VIII) chain isoform X1.
  
0.646
COL23A1
Collagen alpha-1(XXIII) chain.
  
  
0.630
COL17A1
Collagen alpha-1(XVII) chain.
     
0.619
PLOD1
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1.
   
 0.609
COL25A1
Collagen alpha-1(XXV) chain isoform X1.
  
  
0.600
SERPINH1
Serpin H1 isoform X1; Belongs to the serpin family.
   
 0.590
COL1A2
Collagen alpha-2(I) chain.
  
 
0.589
Your Current Organism:
Odobenus rosmarus
NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.