STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DHX15pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15. (795 aa)    
Predicted Functional Partners:
RBM17
Splicing factor 45.
   
 0.996
SNRPA1
U2 small nuclear ribonucleoprotein A.
   
 0.995
TFIP11
Tuftelin-interacting protein 11; Involved in pre-mRNA splicing, specifically in spliceosome disassembly during late-stage splicing events. Intron turnover seems to proceed through reactions in two lariat-intron associated complexes termed Intron Large (IL) and Intron Small (IS). In cooperation with DHX15 seems to mediate the transition of the U2, U5 and U6 snRNP- containing IL complex to the snRNP-free IS complex leading to efficient debranching and turnover of excised introns. May play a role in the differentiation of ameloblasts and odontoblasts or in the forming of the enamel extrac [...]
   
 0.992
CDC40
pre-mRNA-processing factor 17.
   
 0.991
UTP3
Something about silencing protein 10.
   
 0.980
SNRPB2
U2 small nuclear ribonucleoprotein B'' isoform X1.
   
 0.980
CHERP
Calcium homeostasis endoplasmic reticulum protein.
   
 0.979
SUGP1
SURP and G-patch domain-containing protein 1.
   
 0.978
PHF5A
PHD finger-like domain-containing protein 5A.
   
 0.973
EFTUD2
116 kDa U5 small nuclear ribonucleoprotein component isoform X1.
   
 
 0.969
Your Current Organism:
Odobenus rosmarus
NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus
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