STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PTX4LOW QUALITY PROTEIN: pentraxin-4. (475 aa)    
Predicted Functional Partners:
RAB44
Ras-related protein Rab-44.
      
 0.721
VPS52
Vacuolar protein sorting-associated protein 52 homolog isoform X1.
      
 0.616
TREML2
Trem-like transcript 2 protein.
      
 0.615
FOXRED2
FAD-dependent oxidoreductase domain-containing protein 2.
   
  
 0.613
CRP
Pentaxin.
   
 
0.590
AFM
Afamin.
   
  
 0.537
EPHX3
Epoxide hydrolase 3.
      
 0.527
APOH
Beta-2-glycoprotein 1.
   
 
 0.494
FCGR2B
Low affinity immunoglobulin gamma Fc region receptor II-b isoform X1.
    
 
 0.488
C4BPB
C4b-binding protein beta chain.
   
 
 0.459
Your Current Organism:
Odobenus rosmarus
NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.