LMNTD2 protein (Odobenus rosmarus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LMNTD2

Lamin tail domain-containing protein 2. (697 aa)

Predicted Functional Partners:

RHPN1

0.637

SNX22

0.602

BASP1

0.544

EMD

0.544

EHBP1L1

0.523

BANF1

0.519

BANF2

0.519

PECAM1

0.494

PPP1R15B

0.475

PPP1R16B

0.469

Your Current Organism:

Odobenus rosmarus

NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BANF1	EMD	A0A2U3VH50	A0A2U3WY56	Barrier-to-autointegration factor isoform X1.	Emerin.	0.996
BANF1	LMNTD2	A0A2U3VH50	A0A2U3W6T4	Barrier-to-autointegration factor isoform X1.	Lamin tail domain-containing protein 2.	0.519
BANF2	EMD	A0A2U3WSX3	A0A2U3WY56	Barrier-to-autointegration factor-like protein.	Emerin.	0.950
BANF2	LMNTD2	A0A2U3WSX3	A0A2U3W6T4	Barrier-to-autointegration factor-like protein.	Lamin tail domain-containing protein 2.	0.519
BASP1	LMNTD2	A0A2U3WHZ4	A0A2U3W6T4	Brain acid soluble protein 1.	Lamin tail domain-containing protein 2.	0.544
EHBP1L1	LMNTD2	A0A2U3VGT8	A0A2U3W6T4	EH domain-binding protein 1-like protein 1.	Lamin tail domain-containing protein 2.	0.523
EMD	BANF1	A0A2U3WY56	A0A2U3VH50	Emerin.	Barrier-to-autointegration factor isoform X1.	0.996
EMD	BANF2	A0A2U3WY56	A0A2U3WSX3	Emerin.	Barrier-to-autointegration factor-like protein.	0.950
EMD	LMNTD2	A0A2U3WY56	A0A2U3W6T4	Emerin.	Lamin tail domain-containing protein 2.	0.544
LMNTD2	BANF1	A0A2U3W6T4	A0A2U3VH50	Lamin tail domain-containing protein 2.	Barrier-to-autointegration factor isoform X1.	0.519
LMNTD2	BANF2	A0A2U3W6T4	A0A2U3WSX3	Lamin tail domain-containing protein 2.	Barrier-to-autointegration factor-like protein.	0.519
LMNTD2	BASP1	A0A2U3W6T4	A0A2U3WHZ4	Lamin tail domain-containing protein 2.	Brain acid soluble protein 1.	0.544
LMNTD2	EHBP1L1	A0A2U3W6T4	A0A2U3VGT8	Lamin tail domain-containing protein 2.	EH domain-binding protein 1-like protein 1.	0.523
LMNTD2	EMD	A0A2U3W6T4	A0A2U3WY56	Lamin tail domain-containing protein 2.	Emerin.	0.544
LMNTD2	PECAM1	A0A2U3W6T4	A0A2U3WBT3	Lamin tail domain-containing protein 2.	Platelet endothelial cell adhesion molecule.	0.494
LMNTD2	PPP1R15B	A0A2U3W6T4	A0A2U3VE12	Lamin tail domain-containing protein 2.	Protein phosphatase 1 regulatory subunit 15B.	0.475
LMNTD2	PPP1R16B	A0A2U3W6T4	A0A2U3X042	Lamin tail domain-containing protein 2.	Protein phosphatase 1 regulatory inhibitor subunit 16B isoform X1.	0.469
LMNTD2	RHPN1	A0A2U3W6T4	A0A2U3ZG15	Lamin tail domain-containing protein 2.	Rhophilin-1.	0.637
LMNTD2	SNX22	A0A2U3W6T4	A0A2U3WKR0	Lamin tail domain-containing protein 2.	Sorting nexin-22 isoform X1.	0.602
PECAM1	LMNTD2	A0A2U3WBT3	A0A2U3W6T4	Platelet endothelial cell adhesion molecule.	Lamin tail domain-containing protein 2.	0.494