STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAB40BRas-related protein Rab-40B isoform X1. (287 aa)    
Predicted Functional Partners:
WDR45B
WD repeat domain phosphoinositide-interacting protein 3.
 
 
  
 0.808
RILPL2
RILP-like protein 2.
    
 
 0.714
TCEB1
Transcription elongation factor B polypeptide 1; Belongs to the SKP1 family.
    
 
 0.624
KCNH8
Potassium voltage-gated channel subfamily H member 8.
      
 0.619
MTHFSD
Methenyltetrahydrofolate synthase domain-containing protein.
   
    0.610
TBC1D30
TBC1 domain family member 30.
    
 0.597
WDR6
WD repeat-containing protein 6.
   
    0.589
UTP15
U3 small nucleolar RNA-associated protein 15 homolog isoform X1.
   
    0.579
NIPSNAP1
Protein NipSnap homolog 1 isoform X1.
   
 
  0.573
GBAS
Protein NipSnap homolog 2 isoform X1.
   
 
  0.573
Your Current Organism:
Odobenus rosmarus
NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.