ATPAF2 protein (Odobenus rosmarus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ATPAF2

ATP synthase mitochondrial F1 complex assembly factor 2. (289 aa)

Predicted Functional Partners:

ATPAF1

0.740

ATP5A1

0.616

ATP5B

0.606

NDUFS4

0.553

LOC101377101

0.551

ATP5D

0.550

TMEM70

0.544

CDCA8

0.529

CCDC15

0.522

LOC105758217

0.520

Your Current Organism:

Odobenus rosmarus

NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATP5A1	ATP5B	A0A2U3WII6	A0A2U3W1G3	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.999
ATP5A1	ATP5D	A0A2U3WII6	A0A2U3VKZ2	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase subunit delta, mitochondrial isoform X1.	0.999
ATP5A1	ATPAF1	A0A2U3WII6	A0A2U3VYF2	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase mitochondrial F1 complex assembly factor 1 isoform X1.	0.487
ATP5A1	ATPAF2	A0A2U3WII6	A0A2U3WA52	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase mitochondrial F1 complex assembly factor 2.	0.616
ATP5A1	CDCA8	A0A2U3WII6	A0A2U3W3P0	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Borealin.	0.987
ATP5A1	NDUFS4	A0A2U3WII6	A0A2U3WV64	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial.	0.534
ATP5B	ATP5A1	A0A2U3W1G3	A0A2U3WII6	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.999
ATP5B	ATP5D	A0A2U3W1G3	A0A2U3VKZ2	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase subunit delta, mitochondrial isoform X1.	0.999
ATP5B	ATPAF1	A0A2U3W1G3	A0A2U3VYF2	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase mitochondrial F1 complex assembly factor 1 isoform X1.	0.571
ATP5B	ATPAF2	A0A2U3W1G3	A0A2U3WA52	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase mitochondrial F1 complex assembly factor 2.	0.606
ATP5B	NDUFS4	A0A2U3W1G3	A0A2U3WV64	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial.	0.505
ATP5D	ATP5A1	A0A2U3VKZ2	A0A2U3WII6	ATP synthase subunit delta, mitochondrial isoform X1.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.999
ATP5D	ATP5B	A0A2U3VKZ2	A0A2U3W1G3	ATP synthase subunit delta, mitochondrial isoform X1.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.999
ATP5D	ATPAF1	A0A2U3VKZ2	A0A2U3VYF2	ATP synthase subunit delta, mitochondrial isoform X1.	ATP synthase mitochondrial F1 complex assembly factor 1 isoform X1.	0.449
ATP5D	ATPAF2	A0A2U3VKZ2	A0A2U3WA52	ATP synthase subunit delta, mitochondrial isoform X1.	ATP synthase mitochondrial F1 complex assembly factor 2.	0.550
ATP5D	CDCA8	A0A2U3VKZ2	A0A2U3W3P0	ATP synthase subunit delta, mitochondrial isoform X1.	Borealin.	0.978
ATP5D	LOC101377101	A0A2U3VKZ2	A0A2U3VXD7	ATP synthase subunit delta, mitochondrial isoform X1.	Cytochrome b-c1 complex subunit 9 isoform X1.	0.865
ATP5D	NDUFS4	A0A2U3VKZ2	A0A2U3WV64	ATP synthase subunit delta, mitochondrial isoform X1.	NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial.	0.694
ATPAF1	ATP5A1	A0A2U3VYF2	A0A2U3WII6	ATP synthase mitochondrial F1 complex assembly factor 1 isoform X1.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.487
ATPAF1	ATP5B	A0A2U3VYF2	A0A2U3W1G3	ATP synthase mitochondrial F1 complex assembly factor 1 isoform X1.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.571