STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101372791WD repeat-containing protein 44. (288 aa)    
Predicted Functional Partners:
LOC101377265
WD repeat-containing protein 44-like.
 
     0.929
VRK1
Serine/threonine-protein kinase VRK1 isoform X1; Belongs to the protein kinase superfamily.
 
      0.790
AQR
RNA helicase aquarius; Intron-binding spliceosomal protein required to link pre-mRNA splicing and snoRNP (small nucleolar ribonucleoprotein) biogenesis. Plays a key role in position-dependent assembly of intron-encoded box C/D small snoRNP, splicing being required for snoRNP assembly. May act by helping the folding of the snoRNA sequence. Binds to intron of pre- mRNAs in a sequence-independent manner, contacting the region between snoRNA and the branchpoint of introns (40 nucleotides upstream of the branchpoint) during the late stages of splicing.
      
 0.618
RAB3GAP2
Rab3 GTPase-activating protein non-catalytic subunit.
      
 0.607
VAPB
Vesicle-associated membrane protein-associated protein B/C.
   
 
 0.571
RABGEF1
Rab5 GDP/GTP exchange factor isoform X1.
   
  
 0.559
VAPA
Vesicle-associated membrane protein-associated protein A isoform X1.
   
 
 0.536
RAB3GAP1
Rab3 GTPase-activating protein catalytic subunit isoform X1.
      
 0.532
RPL7A
60S ribosomal protein L7a.
 
      0.532
CLEC16A
Protein CLEC16A isoform X1.
      
 0.524
Your Current Organism:
Odobenus rosmarus
NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus
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