SLC7A9 protein (Odobenus rosmarus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SLC7A9

B(0,+)-type amino acid transporter 1 isoform X1. (503 aa)

Predicted Functional Partners:

SLC3A1

0.999

LOC101379734

0.903

SLC3A2

0.810

SLC1A1

0.629

SLC1A7

0.628

KIAA0513

0.562

SLC6A19

0.562

ALKBH2

0.562

SLC1A5

0.550

SLC1A2

0.540

Your Current Organism:

Odobenus rosmarus

NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALKBH2	LOC101379734	A0A2U3X290	A0A2U3ZKX4	Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2.	LOW QUALITY PROTEIN: b(0,+)-type amino acid transporter 1-like.	0.562
ALKBH2	SLC7A9	A0A2U3X290	A0A2U3WAL6	Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2.	B(0,+)-type amino acid transporter 1 isoform X1.	0.562
KIAA0513	LOC101379734	A0A2U3VC80	A0A2U3ZKX4	Uncharacterized protein KIAA0513 homolog isoform X1.	LOW QUALITY PROTEIN: b(0,+)-type amino acid transporter 1-like.	0.562
KIAA0513	SLC7A9	A0A2U3VC80	A0A2U3WAL6	Uncharacterized protein KIAA0513 homolog isoform X1.	B(0,+)-type amino acid transporter 1 isoform X1.	0.562
LOC101379734	ALKBH2	A0A2U3ZKX4	A0A2U3X290	LOW QUALITY PROTEIN: b(0,+)-type amino acid transporter 1-like.	Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2.	0.562
LOC101379734	KIAA0513	A0A2U3ZKX4	A0A2U3VC80	LOW QUALITY PROTEIN: b(0,+)-type amino acid transporter 1-like.	Uncharacterized protein KIAA0513 homolog isoform X1.	0.562
LOC101379734	SLC1A1	A0A2U3ZKX4	A0A2U3WH45	LOW QUALITY PROTEIN: b(0,+)-type amino acid transporter 1-like.	Amino acid transporter.	0.535
LOC101379734	SLC1A2	A0A2U3ZKX4	A0A2U3WCC2	LOW QUALITY PROTEIN: b(0,+)-type amino acid transporter 1-like.	Amino acid transporter.	0.468
LOC101379734	SLC1A5	A0A2U3ZKX4	A0A2U3VZD4	LOW QUALITY PROTEIN: b(0,+)-type amino acid transporter 1-like.	Amino acid transporter.	0.470
LOC101379734	SLC1A7	A0A2U3ZKX4	A0A2U3VY15	LOW QUALITY PROTEIN: b(0,+)-type amino acid transporter 1-like.	Amino acid transporter.	0.534
LOC101379734	SLC3A1	A0A2U3ZKX4	A0A2U3VXK6	LOW QUALITY PROTEIN: b(0,+)-type amino acid transporter 1-like.	Neutral and basic amino acid transport protein rBAT.	0.998
LOC101379734	SLC3A2	A0A2U3ZKX4	A0A2U3WWN9	LOW QUALITY PROTEIN: b(0,+)-type amino acid transporter 1-like.	4F2 cell-surface antigen heavy chain.	0.810
LOC101379734	SLC6A19	A0A2U3ZKX4	A0A2U3WR25	LOW QUALITY PROTEIN: b(0,+)-type amino acid transporter 1-like.	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.	0.562
LOC101379734	SLC7A9	A0A2U3ZKX4	A0A2U3WAL6	LOW QUALITY PROTEIN: b(0,+)-type amino acid transporter 1-like.	B(0,+)-type amino acid transporter 1 isoform X1.	0.903
SLC1A1	LOC101379734	A0A2U3WH45	A0A2U3ZKX4	Amino acid transporter.	LOW QUALITY PROTEIN: b(0,+)-type amino acid transporter 1-like.	0.535
SLC1A1	SLC3A1	A0A2U3WH45	A0A2U3VXK6	Amino acid transporter.	Neutral and basic amino acid transport protein rBAT.	0.602
SLC1A1	SLC3A2	A0A2U3WH45	A0A2U3WWN9	Amino acid transporter.	4F2 cell-surface antigen heavy chain.	0.576
SLC1A1	SLC6A19	A0A2U3WH45	A0A2U3WR25	Amino acid transporter.	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.	0.621
SLC1A1	SLC7A9	A0A2U3WH45	A0A2U3WAL6	Amino acid transporter.	B(0,+)-type amino acid transporter 1 isoform X1.	0.629
SLC1A2	LOC101379734	A0A2U3WCC2	A0A2U3ZKX4	Amino acid transporter.	LOW QUALITY PROTEIN: b(0,+)-type amino acid transporter 1-like.	0.468