STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PDCD5Programmed cell death protein 5. (125 aa)    
Predicted Functional Partners:
RPS19
40S ribosomal protein S19.
  
    0.838
RPL23
60S ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family.
   
  
 0.812
RPS28
40S ribosomal protein S28.
  
    0.812
LOC101385100
60S ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.
   
    0.771
PFDN1
Prefoldin subunit 1.
   
    0.766
LOC105757262
40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.
   
    0.759
SALL4
Sal-like protein 4.
      
 0.756
UVRAG
UV radiation resistance-associated gene protein.
      
 0.755
RPS6
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
   
    0.755
LOC101380875
Small nuclear ribonucleoprotein E; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. May indirectly play a role in hair development.
   
    0.751
Your Current Organism:
Odobenus rosmarus
NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.