BCL2L13 protein (Odobenus rosmarus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BCL2L13

Bcl-2-like protein 13 isoform X2. (472 aa)

Predicted Functional Partners:

GABARAP

0.923

GABARAPL1

0.923

GABARAPL2

0.923

CALCOCO2

0.721

FUNDC1

0.669

MARCH5

0.636

TAX1BP1

0.633

FKBP8

0.621

USP35

0.618

SLC25A23

0.607

Your Current Organism:

Odobenus rosmarus

NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BCL2L13	CALCOCO2	A0A2U3WEE2	A0A2U3VJT9	Bcl-2-like protein 13 isoform X2.	Calcium-binding and coiled-coil domain-containing protein 2 isoform X1.	0.721
BCL2L13	FKBP8	A0A2U3WEE2	A0A2U3W8V3	Bcl-2-like protein 13 isoform X2.	Peptidylprolyl isomerase.	0.621
BCL2L13	FUNDC1	A0A2U3WEE2	A0A2U3WQH5	Bcl-2-like protein 13 isoform X2.	FUN14 domain-containing protein 1.	0.669
BCL2L13	GABARAP	A0A2U3WEE2	A0A2U3VTD0	Bcl-2-like protein 13 isoform X2.	Gamma-aminobutyric acid receptor-associated protein.	0.923
BCL2L13	GABARAPL1	A0A2U3WEE2	A0A2U3WTH7	Bcl-2-like protein 13 isoform X2.	Gamma-aminobutyric acid receptor-associated protein-like 1.	0.923
BCL2L13	GABARAPL2	A0A2U3WEE2	A0A2U3ZTN5	Bcl-2-like protein 13 isoform X2.	Gamma-aminobutyric acid receptor-associated protein-like 2.	0.923
BCL2L13	MARCH5	A0A2U3WEE2	A0A2U3ZRE2	Bcl-2-like protein 13 isoform X2.	E3 ubiquitin-protein ligase MARCH5 isoform X1.	0.636
BCL2L13	SLC25A23	A0A2U3WEE2	A0A2U3VKA2	Bcl-2-like protein 13 isoform X2.	Calcium-binding mitochondrial carrier protein SCaMC-3; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.607
BCL2L13	TAX1BP1	A0A2U3WEE2	A0A2U3ZCS0	Bcl-2-like protein 13 isoform X2.	Tax1-binding protein 1 isoform X1.	0.633
BCL2L13	USP35	A0A2U3WEE2	A0A2U3VBJ7	Bcl-2-like protein 13 isoform X2.	Ubiquitin carboxyl-terminal hydrolase 35; Belongs to the peptidase C19 family.	0.618
CALCOCO2	BCL2L13	A0A2U3VJT9	A0A2U3WEE2	Calcium-binding and coiled-coil domain-containing protein 2 isoform X1.	Bcl-2-like protein 13 isoform X2.	0.721
CALCOCO2	FUNDC1	A0A2U3VJT9	A0A2U3WQH5	Calcium-binding and coiled-coil domain-containing protein 2 isoform X1.	FUN14 domain-containing protein 1.	0.446
CALCOCO2	GABARAP	A0A2U3VJT9	A0A2U3VTD0	Calcium-binding and coiled-coil domain-containing protein 2 isoform X1.	Gamma-aminobutyric acid receptor-associated protein.	0.936
CALCOCO2	GABARAPL1	A0A2U3VJT9	A0A2U3WTH7	Calcium-binding and coiled-coil domain-containing protein 2 isoform X1.	Gamma-aminobutyric acid receptor-associated protein-like 1.	0.958
CALCOCO2	GABARAPL2	A0A2U3VJT9	A0A2U3ZTN5	Calcium-binding and coiled-coil domain-containing protein 2 isoform X1.	Gamma-aminobutyric acid receptor-associated protein-like 2.	0.959
FKBP8	BCL2L13	A0A2U3W8V3	A0A2U3WEE2	Peptidylprolyl isomerase.	Bcl-2-like protein 13 isoform X2.	0.621
FKBP8	FUNDC1	A0A2U3W8V3	A0A2U3WQH5	Peptidylprolyl isomerase.	FUN14 domain-containing protein 1.	0.759
FKBP8	MARCH5	A0A2U3W8V3	A0A2U3ZRE2	Peptidylprolyl isomerase.	E3 ubiquitin-protein ligase MARCH5 isoform X1.	0.453
FKBP8	USP35	A0A2U3W8V3	A0A2U3VBJ7	Peptidylprolyl isomerase.	Ubiquitin carboxyl-terminal hydrolase 35; Belongs to the peptidase C19 family.	0.618
FUNDC1	BCL2L13	A0A2U3WQH5	A0A2U3WEE2	FUN14 domain-containing protein 1.	Bcl-2-like protein 13 isoform X2.	0.669