STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAMD8Sphingomyelin synthase-related protein 1. (478 aa)    
Predicted Functional Partners:
ERLIN1
Erlin-1.
      
 0.756
AP3M1
AP-3 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.
      
 0.729
PRLHR
Prolactin-releasing peptide receptor; Belongs to the G-protein coupled receptor 1 family.
      
 0.527
SNX29
Sorting nexin-29.
      
 0.525
ACER2
Alkaline ceramidase; Hydrolyzes the sphingolipid ceramide into sphingosine and free fatty acid.
      
 0.523
ATP11B
Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.
   
  
 0.523
DUSP13
Dual specificity protein phosphatase 13 isoform X1; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.
      
 0.522
GDE1
Glycerophosphodiester phosphodiesterase 1.
      
 0.522
DGKH
Diacylglycerol kinase.
      
 0.522
ADAP1
arf-GAP with dual PH domain-containing protein 1 isoform X1.
      
 0.455
Your Current Organism:
Odobenus rosmarus
NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus
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