NOC2L protein (Odobenus rosmarus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

NOC2L

Nucleolar complex protein 2 homolog. (747 aa)

Predicted Functional Partners:

NOC3L

0.995

NIFK

0.994

PES1

0.993

BOP1

0.993

CEBPZ

0.992

EBNA1BP2

0.990

RSL1D1

0.990

FTSJ3

0.990

BRIX1

0.990

GTPBP4

0.990

Your Current Organism:

Odobenus rosmarus

NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BOP1	BRIX1	A0A2U3ZG08	A0A2U3WUH3	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Ribosome biogenesis protein BRX1 homolog.	0.990
BOP1	CEBPZ	A0A2U3ZG08	A0A2U3WM34	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	CCAAT/enhancer-binding protein zeta.	0.949
BOP1	EBNA1BP2	A0A2U3ZG08	A0A2U3VYQ0	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Probable rRNA-processing protein EBP2.	0.991
BOP1	FTSJ3	A0A2U3ZG08	A0A2U3WBU6	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.	0.990
BOP1	GTPBP4	A0A2U3ZG08	A0A2U3WXM7	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.992
BOP1	NIFK	A0A2U3ZG08	A0A2U3ZK04	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	MKI67 FHA domain-interacting nucleolar phosphoprotein isoform X1.	0.975
BOP1	NOC2L	A0A2U3ZG08	A0A2U3WFN6	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Nucleolar complex protein 2 homolog.	0.993
BOP1	NOC3L	A0A2U3ZG08	A0A2U3WTB4	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Nucleolar complex protein 3 homolog.	0.991
BOP1	PES1	A0A2U3ZG08	A0A2U3VXD0	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome; Belongs to the pescadillo family.	0.999
BOP1	RSL1D1	A0A2U3ZG08	A0A2U3W086	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Ribosomal L1 domain-containing protein 1.	0.991
BRIX1	BOP1	A0A2U3WUH3	A0A2U3ZG08	Ribosome biogenesis protein BRX1 homolog.	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.990
BRIX1	CEBPZ	A0A2U3WUH3	A0A2U3WM34	Ribosome biogenesis protein BRX1 homolog.	CCAAT/enhancer-binding protein zeta.	0.933
BRIX1	EBNA1BP2	A0A2U3WUH3	A0A2U3VYQ0	Ribosome biogenesis protein BRX1 homolog.	Probable rRNA-processing protein EBP2.	0.996
BRIX1	FTSJ3	A0A2U3WUH3	A0A2U3WBU6	Ribosome biogenesis protein BRX1 homolog.	pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.	0.947
BRIX1	GTPBP4	A0A2U3WUH3	A0A2U3WXM7	Ribosome biogenesis protein BRX1 homolog.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.991
BRIX1	NIFK	A0A2U3WUH3	A0A2U3ZK04	Ribosome biogenesis protein BRX1 homolog.	MKI67 FHA domain-interacting nucleolar phosphoprotein isoform X1.	0.995
BRIX1	NOC2L	A0A2U3WUH3	A0A2U3WFN6	Ribosome biogenesis protein BRX1 homolog.	Nucleolar complex protein 2 homolog.	0.990
BRIX1	NOC3L	A0A2U3WUH3	A0A2U3WTB4	Ribosome biogenesis protein BRX1 homolog.	Nucleolar complex protein 3 homolog.	0.987
BRIX1	PES1	A0A2U3WUH3	A0A2U3VXD0	Ribosome biogenesis protein BRX1 homolog.	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome; Belongs to the pescadillo family.	0.975
BRIX1	RSL1D1	A0A2U3WUH3	A0A2U3W086	Ribosome biogenesis protein BRX1 homolog.	Ribosomal L1 domain-containing protein 1.	0.991