STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMGA1High mobility group protein HMG-I/HMG-Y isoform X1. (107 aa)    
Predicted Functional Partners:
HMGA2
High mobility group protein HMGI-C.
   
 
0.777
MYBL1
Myb-related protein A isoform X1.
   
  
 0.758
RPS10
40S ribosomal protein S10.
      
 0.616
TAF11
Transcription initiation factor TFIID subunit 11 isoform X1.
      
 0.608
PACSIN1
Protein kinase C and casein kinase substrate in neurons protein 1 isoform X1.
      
 0.598
IGF2BP1
Insulin-like growth factor 2 mRNA-binding protein 1 isoform X1.
   
 
 0.548
SPDEF
SAM pointed domain-containing Ets transcription factor.
      
 0.527
ARID3B
AT-rich interactive domain-containing protein 3B isoform X1.
      
 0.527
RGR
RPE-retinal G protein-coupled receptor.
      
 0.526
TPBGL
Trophoblast glycoprotein-like.
      
 0.522
Your Current Organism:
Odobenus rosmarus
NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus
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