GTPBP2 protein (Odobenus rosmarus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

GTPBP2

GTP-binding protein 2. (602 aa)

Predicted Functional Partners:

PELO

0.736

DCAF17

0.722

MRRF

0.712

REPS1

0.657

LOC101362844

0.647

AP4M1

0.625

NCOA7

0.621

GBA2

0.618

NEMF

0.616

CTNND1

0.535

Your Current Organism:

Odobenus rosmarus

NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AP4M1	DCAF17	A0A2U3WYP9	A0A2U3WG89	AP-4 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.	DDB1- and CUL4-associated factor 17 isoform X1.	0.723
AP4M1	GBA2	A0A2U3WYP9	A0A2U3VCL9	AP-4 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.	Non-lysosomal glucosylceramidase; Non-lysosomal glucosylceramidase that catalyzes the hydrolysis of glucosylceramide (GlcCer) to free glucose and ceramide.	0.712
AP4M1	GTPBP2	A0A2U3WYP9	A0A2U3WHH4	AP-4 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.	GTP-binding protein 2.	0.625
AP4M1	REPS1	A0A2U3WYP9	A0A2U3ZQN0	AP-4 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.	ralBP1-associated Eps domain-containing protein 1 isoform X1.	0.661
CTNND1	GBA2	A0A2U3WKD6	A0A2U3VCL9	Catenin delta-1 isoform X1.	Non-lysosomal glucosylceramidase; Non-lysosomal glucosylceramidase that catalyzes the hydrolysis of glucosylceramide (GlcCer) to free glucose and ceramide.	0.454
CTNND1	GTPBP2	A0A2U3WKD6	A0A2U3WHH4	Catenin delta-1 isoform X1.	GTP-binding protein 2.	0.535
CTNND1	NCOA7	A0A2U3WKD6	A0A2U3ZK00	Catenin delta-1 isoform X1.	Nuclear receptor coactivator 7 isoform X1.	0.463
DCAF17	AP4M1	A0A2U3WG89	A0A2U3WYP9	DDB1- and CUL4-associated factor 17 isoform X1.	AP-4 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.	0.723
DCAF17	GTPBP2	A0A2U3WG89	A0A2U3WHH4	DDB1- and CUL4-associated factor 17 isoform X1.	GTP-binding protein 2.	0.722
DCAF17	REPS1	A0A2U3WG89	A0A2U3ZQN0	DDB1- and CUL4-associated factor 17 isoform X1.	ralBP1-associated Eps domain-containing protein 1 isoform X1.	0.736
GBA2	AP4M1	A0A2U3VCL9	A0A2U3WYP9	Non-lysosomal glucosylceramidase; Non-lysosomal glucosylceramidase that catalyzes the hydrolysis of glucosylceramide (GlcCer) to free glucose and ceramide.	AP-4 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.	0.712
GBA2	CTNND1	A0A2U3VCL9	A0A2U3WKD6	Non-lysosomal glucosylceramidase; Non-lysosomal glucosylceramidase that catalyzes the hydrolysis of glucosylceramide (GlcCer) to free glucose and ceramide.	Catenin delta-1 isoform X1.	0.454
GBA2	GTPBP2	A0A2U3VCL9	A0A2U3WHH4	Non-lysosomal glucosylceramidase; Non-lysosomal glucosylceramidase that catalyzes the hydrolysis of glucosylceramide (GlcCer) to free glucose and ceramide.	GTP-binding protein 2.	0.618
GBA2	NCOA7	A0A2U3VCL9	A0A2U3ZK00	Non-lysosomal glucosylceramidase; Non-lysosomal glucosylceramidase that catalyzes the hydrolysis of glucosylceramide (GlcCer) to free glucose and ceramide.	Nuclear receptor coactivator 7 isoform X1.	0.525
GBA2	REPS1	A0A2U3VCL9	A0A2U3ZQN0	Non-lysosomal glucosylceramidase; Non-lysosomal glucosylceramidase that catalyzes the hydrolysis of glucosylceramide (GlcCer) to free glucose and ceramide.	ralBP1-associated Eps domain-containing protein 1 isoform X1.	0.409
GTPBP2	AP4M1	A0A2U3WHH4	A0A2U3WYP9	GTP-binding protein 2.	AP-4 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.	0.625
GTPBP2	CTNND1	A0A2U3WHH4	A0A2U3WKD6	GTP-binding protein 2.	Catenin delta-1 isoform X1.	0.535
GTPBP2	DCAF17	A0A2U3WHH4	A0A2U3WG89	GTP-binding protein 2.	DDB1- and CUL4-associated factor 17 isoform X1.	0.722
GTPBP2	GBA2	A0A2U3WHH4	A0A2U3VCL9	GTP-binding protein 2.	Non-lysosomal glucosylceramidase; Non-lysosomal glucosylceramidase that catalyzes the hydrolysis of glucosylceramide (GlcCer) to free glucose and ceramide.	0.618
GTPBP2	LOC101362844	A0A2U3WHH4	A0A2U3W9H5	GTP-binding protein 2.	Uncharacterized protein C2orf82 homolog.	0.647