STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101363650Protein CASC4-like. (168 aa)    
Predicted Functional Partners:
LOC101380918
Protein CASC4.
 
     0.926
CASC3
Protein CASC3.
      
 0.619
TBC1D25
TBC1 domain family member 25 isoform X1.
      
 0.523
FGFR1OP
FGFR1 oncogene partner isoform X1.
    
 
 0.453
SUPT3H
Transcription initiation protein SPT3 homolog.
    
 0.450
RHOT1
Mitochondrial Rho GTPase; Mitochondrial GTPase involved in mitochondrial trafficking. Belongs to the mitochondrial Rho GTPase family.
    
 0.412
TEP1
Telomerase protein component 1.
    
 0.410
LOC101386840
Tetratricopeptide repeat protein GNN-like.
    
 0.404
SUN5
SUN domain-containing protein 5.
    
 
 0.403
POLM
DNA-directed DNA/RNA polymerase mu; Gap-filling polymerase involved in repair of DNA double- strand breaks by non-homologous end joining (NHEJ). Belongs to the DNA polymerase type-X family.
   
  
 0.400
Your Current Organism:
Odobenus rosmarus
NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus
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