LOC101372893 protein (Odobenus rosmarus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC101372893

Uncharacterized protein C6orf15 homolog. (287 aa)

Predicted Functional Partners:

POLR2B

0.905

SUPT4H1

0.893

POLR2C

0.892

POLR2E

0.891

POLR2D

0.891

POLR2G

0.891

SUPT16H

0.885

POLR2F

0.883

POLR2I

0.881

LEO1

0.880

Your Current Organism:

Odobenus rosmarus

NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LEO1	LOC101372893	A0A2U3VNG6	A0A2U3WJW0	RNA polymerase-associated protein LEO1 isoform X1.	Uncharacterized protein C6orf15 homolog.	0.880
LEO1	POLR2B	A0A2U3VNG6	A0A2U3VJF7	RNA polymerase-associated protein LEO1 isoform X1.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.980
LEO1	POLR2C	A0A2U3VNG6	A0A2U3VLH5	RNA polymerase-associated protein LEO1 isoform X1.	DNA-directed RNA polymerase II subunit RPB3.	0.979
LEO1	POLR2D	A0A2U3VNG6	A0A2U3WJF4	RNA polymerase-associated protein LEO1 isoform X1.	DNA-directed RNA polymerase II subunit RPB4.	0.956
LEO1	POLR2E	A0A2U3VNG6	A0A2U3VKP2	RNA polymerase-associated protein LEO1 isoform X1.	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	0.968
LEO1	POLR2F	A0A2U3VNG6	A0A2U3WP00	RNA polymerase-associated protein LEO1 isoform X1.	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	0.960
LEO1	POLR2G	A0A2U3VNG6	A0A2U3WWN3	RNA polymerase-associated protein LEO1 isoform X1.	DNA-directed RNA polymerase II subunit RPB7.	0.976
LEO1	POLR2I	A0A2U3VNG6	A0A2U3VN67	RNA polymerase-associated protein LEO1 isoform X1.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.968
LEO1	SUPT16H	A0A2U3VNG6	A0A2U3W2J3	RNA polymerase-associated protein LEO1 isoform X1.	FACT complex subunit SPT16.	0.997
LEO1	SUPT4H1	A0A2U3VNG6	A0A2U3VR44	RNA polymerase-associated protein LEO1 isoform X1.	Transcription elongation factor SPT4.	0.980
LOC101372893	LEO1	A0A2U3WJW0	A0A2U3VNG6	Uncharacterized protein C6orf15 homolog.	RNA polymerase-associated protein LEO1 isoform X1.	0.880
LOC101372893	POLR2B	A0A2U3WJW0	A0A2U3VJF7	Uncharacterized protein C6orf15 homolog.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.905
LOC101372893	POLR2C	A0A2U3WJW0	A0A2U3VLH5	Uncharacterized protein C6orf15 homolog.	DNA-directed RNA polymerase II subunit RPB3.	0.892
LOC101372893	POLR2D	A0A2U3WJW0	A0A2U3WJF4	Uncharacterized protein C6orf15 homolog.	DNA-directed RNA polymerase II subunit RPB4.	0.891
LOC101372893	POLR2E	A0A2U3WJW0	A0A2U3VKP2	Uncharacterized protein C6orf15 homolog.	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	0.891
LOC101372893	POLR2F	A0A2U3WJW0	A0A2U3WP00	Uncharacterized protein C6orf15 homolog.	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	0.883
LOC101372893	POLR2G	A0A2U3WJW0	A0A2U3WWN3	Uncharacterized protein C6orf15 homolog.	DNA-directed RNA polymerase II subunit RPB7.	0.891
LOC101372893	POLR2I	A0A2U3WJW0	A0A2U3VN67	Uncharacterized protein C6orf15 homolog.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.881
LOC101372893	SUPT16H	A0A2U3WJW0	A0A2U3W2J3	Uncharacterized protein C6orf15 homolog.	FACT complex subunit SPT16.	0.885
LOC101372893	SUPT4H1	A0A2U3WJW0	A0A2U3VR44	Uncharacterized protein C6orf15 homolog.	Transcription elongation factor SPT4.	0.893