YPEL4 protein (Odobenus rosmarus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

YPEL4

Protein yippee-like; Belongs to the yippee family. (127 aa)

Predicted Functional Partners:

PPP1R10

0.622

GNB3

0.596

WDR26

0.574

SLC25A12

0.537

ADCY7

0.530

TTF2

0.524

PLCZ1

0.503

PLCL2

0.502

RANBP10

0.501

SLC38A4

0.497

Your Current Organism:

Odobenus rosmarus

NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ADCY7	GNB3	A0A2U3ZP39	A0A2U3WX02	Adenylate cyclase; Catalyzes the formation of the signaling molecule cAMP in response to G-protein signaling.	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3.	0.861
ADCY7	YPEL4	A0A2U3ZP39	A0A2U3WKC5	Adenylate cyclase; Catalyzes the formation of the signaling molecule cAMP in response to G-protein signaling.	Protein yippee-like; Belongs to the yippee family.	0.530
GNB3	ADCY7	A0A2U3WX02	A0A2U3ZP39	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3.	Adenylate cyclase; Catalyzes the formation of the signaling molecule cAMP in response to G-protein signaling.	0.861
GNB3	YPEL4	A0A2U3WX02	A0A2U3WKC5	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3.	Protein yippee-like; Belongs to the yippee family.	0.596
PLCL2	YPEL4	A0A2U3WJW3	A0A2U3WKC5	Phosphoinositide phospholipase C.	Protein yippee-like; Belongs to the yippee family.	0.502
PLCZ1	YPEL4	A0A2U3WJW5	A0A2U3WKC5	Phosphoinositide phospholipase C.	Protein yippee-like; Belongs to the yippee family.	0.503
PPP1R10	SLC25A12	A0A2U3ZPJ2	A0A2U3WG91	Serine/threonine-protein phosphatase 1 regulatory subunit 10.	Calcium-binding mitochondrial carrier protein Aralar1 isoform X1; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.422
PPP1R10	YPEL4	A0A2U3ZPJ2	A0A2U3WKC5	Serine/threonine-protein phosphatase 1 regulatory subunit 10.	Protein yippee-like; Belongs to the yippee family.	0.622
RANBP10	WDR26	A0A2U3VFV3	A0A2U3VFT8	Ran-binding protein 10.	WD repeat-containing protein 26 isoform X2.	0.962
RANBP10	YPEL4	A0A2U3VFV3	A0A2U3WKC5	Ran-binding protein 10.	Protein yippee-like; Belongs to the yippee family.	0.501
SLC25A12	PPP1R10	A0A2U3WG91	A0A2U3ZPJ2	Calcium-binding mitochondrial carrier protein Aralar1 isoform X1; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Serine/threonine-protein phosphatase 1 regulatory subunit 10.	0.422
SLC25A12	YPEL4	A0A2U3WG91	A0A2U3WKC5	Calcium-binding mitochondrial carrier protein Aralar1 isoform X1; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Protein yippee-like; Belongs to the yippee family.	0.537
SLC38A4	YPEL4	A0A2U3VMB0	A0A2U3WKC5	Sodium-coupled neutral amino acid transporter 4.	Protein yippee-like; Belongs to the yippee family.	0.497
TTF2	YPEL4	A0A2U3WYH4	A0A2U3WKC5	Transcription termination factor 2.	Protein yippee-like; Belongs to the yippee family.	0.524
WDR26	RANBP10	A0A2U3VFT8	A0A2U3VFV3	WD repeat-containing protein 26 isoform X2.	Ran-binding protein 10.	0.962
WDR26	YPEL4	A0A2U3VFT8	A0A2U3WKC5	WD repeat-containing protein 26 isoform X2.	Protein yippee-like; Belongs to the yippee family.	0.574
YPEL4	ADCY7	A0A2U3WKC5	A0A2U3ZP39	Protein yippee-like; Belongs to the yippee family.	Adenylate cyclase; Catalyzes the formation of the signaling molecule cAMP in response to G-protein signaling.	0.530
YPEL4	GNB3	A0A2U3WKC5	A0A2U3WX02	Protein yippee-like; Belongs to the yippee family.	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3.	0.596
YPEL4	PLCL2	A0A2U3WKC5	A0A2U3WJW3	Protein yippee-like; Belongs to the yippee family.	Phosphoinositide phospholipase C.	0.502
YPEL4	PLCZ1	A0A2U3WKC5	A0A2U3WJW5	Protein yippee-like; Belongs to the yippee family.	Phosphoinositide phospholipase C.	0.503